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Pscan Web

Ver. 1.6 (Last update: 23 Jun 2021)

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Source:
Download Pscan source code

Reference:
F.Zambelli, G.Pesole, G.Pavesi
Pscan: Finding Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.
Nucleic Acids Research 2009 37(Web Server issue):W247-W252.

Contacts:
giulio.pavesi@unimi.it
federico.zambelli@unimi.it

Sample data

List of Human NFkB target genes, collected from literature. NFkBxx indicates that xx percent of the genes in the list are NFkB targets, while the others are random genes added to the set to assess the performance of the algorithm.

NFkB100 NFkB90 NFkB80 NFkB70 NFkB60 NFkB50 NFkB40

List of Human NRF1 target genes. NRFxx should be read as in the NFkB dataset.

NRF1_100 NRF1_90 NRF1_80 NRF1_70 NRF1_60 NRF1_50 NRF1_40

NRF1 Matrix

Human tissue specific genes:

Liver

Select Organism:
Select Region:
Select Descriptors:	Jaspar 2020_NR Jaspar 2020_R Jaspar 2018_NR Jaspar_Fam Transfac User Defined