NEW: Starting a large job on file G1S.cycle.fasta

Organism code: HS
./weederlauncher.out G1S.cycle.fasta HS large


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f G1S.cycle.fasta -R 50 -O HS -W 6 -e 1 -N -N -T 10 )
1) CGCGAA 1.18
2) CGCGCA 1.14
3) TTCGCG 1.09
4) GCGCGA 1.06
5) CCGCGT 1.03
6) TCGCGC 1.03
7) TGCGCG 1.02
8) CGCGCG 1.02
9) TACCGC 1.01
10) GCGCGT 0.99

Elapsed time : 0 min. 7 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f G1S.cycle.fasta -R 50 -O HS -W 8 -e 2 -N -N -T 10 )
1) TTCGCGCG 1.37
2) TTTCGCGC 1.18
3) TTGGCGCG 1.17
4) GGCGCGAA 1.16
5) GCGCGAAA 1.15
6) CAATCGCG 1.14
7) GGCGGGAC 1.13
8) GCGCGGTA 1.12
9) CGCGAAAC 1.12
10) CGCGCGAA 1.12

Elapsed time : 1 min. 8 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f G1S.cycle.fasta -R 50 -O HS -W 10 -e 3 -N -N -T 10 )
1) TTCGCGCGAA 1.47
2) TTTCGCGCGA 1.43
3) TTGGCGCGAA 1.42
4) CGTTTCGCGC 1.38
5) TTGGCGCGTA 1.30
6) TTTTCGCGCG 1.20
7) TCGCGCGAAA 1.18
8) CGTTTGGCGC 1.17
9) GCGCCAATCG 1.13
10) ATTGGCGCGA 1.11

Elapsed time : 11 min. 14 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f G1S.cycle.fasta -R 50 -O HS -W 12 -e 4 -N -N -T 10 )
1) TTTCGCGCGAAA 1.82
2) TTCGCGCGAAAC 1.79
3) CGCAATCGCGCG 1.75
4) GGGCGGGACCGG 1.74
5) GCGTCTCGCGGG 1.73
6) GTTTGGCGCGAA 1.73
7) GCGGGGCGGGAC 1.71
8) GGCGGGGCGAAG 1.71
9) GATTGGCGCGAA 1.71
10) GGGGCGGGACGG 1.71

Elapsed time : 31 min. 21 sec.


Your sequences:

Sequence 1 : >NM_172164
Sequence 2 : >NM_004153
Sequence 3 : >NM_203350
Sequence 4 : >NM_006594
Sequence 5 : >NM_005997
Sequence 6 : >NM_025207
Sequence 7 : >NM_005343
Sequence 8 : >NM_001909
Sequence 9 : >NM_006591
Sequence 10 : >NM_002519
Sequence 11 : >NM_006500
Sequence 12 : >NM_015270
Sequence 13 : >NM_080911
Sequence 14 : >NM_014953
Sequence 15 : >NM_006260
Sequence 16 : >NM_018011
Sequence 17 : >NM_002687
Sequence 18 : >NM_001107
Sequence 19 : >NM_017858
Sequence 20 : >NM_022770
Sequence 21 : >NM_020310
Sequence 22 : >NM_004618
Sequence 23 : >NM_001254
Sequence 24 : >NM_024015
Sequence 25 : >NM_002758
Sequence 26 : >NM_017451
Sequence 27 : >NM_005483
Sequence 28 : >NM_000208
Sequence 29 : >NM_001238
Sequence 30 : >NM_052925
Sequence 31 : >NM_198055
Sequence 32 : >NM_001006
Sequence 33 : >BC022328
Sequence 34 : >NM_000251
Sequence 35 : >NM_005915
Sequence 36 : >NM_000465
Sequence 37 : >NM_002592
Sequence 38 : >NM_005225
Sequence 39 : >NM_006988
Sequence 40 : >NM_017613
Sequence 41 : >NM_001754
Sequence 42 : >NM_005441
Sequence 43 : >NM_006739
Sequence 44 : >NM_014296
Sequence 45 : >NM_005385
Sequence 46 : >NM_001789
Sequence 47 : >NM_004526
Sequence 48 : >NM_007027
Sequence 49 : >NM_007107
Sequence 50 : >NM_003262
Sequence 51 : >CR594689
Sequence 52 : >NM_020931
Sequence 53 : >NM_016277
Sequence 54 : >NM_012115
Sequence 55 : >NM_004506
Sequence 56 : >NM_012328
Sequence 57 : >NM_005515
Sequence 58 : >NM_006803
Sequence 59 : >NM_005914
Sequence 60 : >NM_057749
Sequence 61 : >NM_004629
Sequence 62 : >NM_013444


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


CGCGAA

6 redundant motifs found:
CGCGAAAC - CGCGCGAA - GCGCGAAA - GGCGCGAA - GCGCGA - CGCGCA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .CGCGGA. 328 (91.87)
1 + [GGCGAA] 453 (88.20)
1 + [CGCGCG] 487 (85.47)
2 + [CGCGCG] 64 (85.47)
2 + .CGCGAA. 519 (100.00)
3 + .CGCGAG. 463 (92.25)
4 + .CGCGGA. 184 (91.87)
4 + [CGCGCG] 210 (85.47)
4 + [CGGGCA] 232 (85.56)
4 + [CGCGCG] 245 (85.47)
4 + .CGCGCA. 318 (93.23)
4 + [CGCGAT] 480 (85.21)
5 + .CGCGCA. 344 (93.23)
6 + [CGAGAA] 323 (88.16)
7 + .CGCGCA. 416 (93.23)
7 + .CGCGGA. 533 (91.87)
8 + .CGCGCA. 234 (93.23)
8 + .CGGGAA. 336 (92.33)
8 + .CGCGAG. 383 (92.25)
8 + .CGGGAA. 392 (92.33)
8 + .CGCGCA. 500 (93.23)
9 + .CGCGCA. 166 (93.23)
10 + .CGCCAA. 68 (91.25)
10 + [GGCGAA] 334 (88.20)
10 + [CGTGAA] 395 (85.30)
10 + [AGCGAA] 400 (87.16)
10 + .CGCGAG. 424 (92.25)
11 + [CGGGCA] 211 (85.56)
11 + [CGCGCG] 395 (85.47)
11 + .CGGGAA. 522 (92.33)
13 + [CGCGAT] 157 (85.21)
13 + [AGCGAA] 329 (87.16)
13 + [CGGGCA] 351 (85.56)
13 + .CGCCAA. 484 (91.25)
13 + [CGCGCG] 542 (85.47)
14 + .CGCGAG. 412 (92.25)
14 + [CGAGAA] 414 (88.16)
14 + .CGGGAA. 434 (92.33)
15 + [GGCGAA] 34 (88.20)
15 + .CGCCAA. 66 (91.25)
15 + .CGCGAA. 284 (100.00)
15 + .CGCGAG. 513 (92.25)
16 + .CGCCAA. 319 (91.25)
16 + [GGCGAA] 325 (88.20)
16 + .CGCCAA. 365 (91.25)
16 + .CGCGCA. 461 (93.23)
17 + .CGCGAG. 285 (92.25)
17 + [CGAGAA] 301 (88.16)
18 + [AGCGAA] 466 (87.16)
18 + .CGCGGA. 499 (91.87)
19 + .CGCCAA. 409 (91.25)
19 + .CGCGAG. 454 (92.25)
19 + [CGAGAA] 456 (88.16)
20 + .CGGGAA. 449 (92.33)
21 + [CGTGAA] 91 (85.30)
21 + .CGCGCA. 172 (93.23)
21 + [CGCGCG] 220 (85.47)
21 + .CGCGAG. 273 (92.25)
22 + .CGCGAG. 81 (92.25)
22 + .CGGGAA. 358 (92.33)
22 + .CGGGAA. 399 (92.33)
22 + [CGCGCG] 479 (85.47)
22 + .CGCCAA. 524 (91.25)
23 + [CGCGCG] 268 (85.47)
23 + [GGCGAA] 413 (88.20)
23 + .CGCGAG. 498 (92.25)
24 + [CGCGCG] 227 (85.47)
24 + .CGGGAA. 407 (92.33)
25 + .CGGGAA. 58 (92.33)
25 + [CGAGAA] 265 (88.16)
26 + .CGCGAA. 33 (100.00)
26 + [CGCGCG] 51 (85.47)
27 + [CGCGAT] 215 (85.21)
27 + .CGCGGA. 325 (91.87)
27 + .CGCGAG. 375 (92.25)
27 + [CGCGCG] 445 (85.47)
27 + .CGCGGA. 447 (91.87)
27 + .CGCCAA. 475 (91.25)
27 + [GGCGAA] 526 (88.20)
28 + [CGCGCG] 233 (85.47)
28 + [CGCGAC] 264 (86.13)
28 + [CGCGCG] 276 (85.47)
28 + .CGCGGA. 315 (91.87)
28 + [GGCGAA] 416 (88.20)
28 + [CGCGCG] 424 (85.47)
28 + [CGCGCG] 426 (85.47)
28 + [CGCGCG] 509 (85.47)
29 + [CGCGCG] 174 (85.47)
29 + .CGCGCA. 253 (93.23)
29 + [CGCGCG] 393 (85.47)
29 + [CGCGCG] 457 (85.47)
29 + .CGCGCA. 459 (93.23)
29 + .CGCGGA. 540 (91.87)
30 + [CGAGAA] 8 (88.16)
30 + [CGGGCA] 67 (85.56)
30 + [CGCGCG] 79 (85.47)
30 + [CGAGAA] 217 (88.16)
31 + [CGCGCG] 496 (85.47)
31 + [CGCGCG] 498 (85.47)
31 + .CGCGCA. 500 (93.23)
32 + .CGCGAG. 261 (92.25)
32 + [CGGGCA] 541 (85.56)
33 + [CGCGAC] 100 (86.13)
33 + .CGGGAA. 232 (92.33)
33 + .CGCGCA. 424 (93.23)
33 + [CGCAAA] 450 (86.71)
33 + .CGCGAA. 478 (100.00)
34 + [CGGGCA] 176 (85.56)
34 + [CGCGCG] 322 (85.47)
34 + [CGCGAC] 324 (86.13)
34 + .CGGGAA. 372 (92.33)
34 + .CGGGAA. 503 (92.33)
34 + .CGCGCA. 530 (93.23)
35 + [CGCAAA] 309 (86.71)
35 + .CGCGAA. 352 (100.00)
35 + .CGCGAA. 414 (100.00)
35 + [CGCGCG] 494 (85.47)
35 + .CGCGCA. 496 (93.23)
35 + [CGCAAA] 498 (86.71)
36 + [CGCGCG] 23 (85.47)
36 + [CGCGCG] 92 (85.47)
36 + [CGCGCG] 195 (85.47)
36 + [CGCGCG] 426 (85.47)
36 + .CGGGAA. 465 (92.33)
37 + .CGCGAG. 56 (92.25)
37 + [AGCGAA] 67 (87.16)
37 + [CGGGCA] 97 (85.56)
37 + [CGCGCG] 103 (85.47)
37 + .CGCGGA. 105 (91.87)
37 + [CGCGCG] 143 (85.47)
37 + .CGCGCA. 315 (93.23)
37 + [CGCAAA] 356 (86.71)
37 + .CGCGCA. 417 (93.23)
37 + .CGGGAA. 443 (92.33)
37 + .CGCGGA. 498 (91.87)
38 + [CGCGCG] 306 (85.47)
39 + .CGCGGA. 330 (91.87)
39 + .CGCGGA. 366 (91.87)
40 + .CGCCAA. 177 (91.25)
40 + [CGCGCG] 515 (85.47)
40 + [CGCGCG] 517 (85.47)
40 + .CGGGAA. 521 (92.33)
42 + [AGCGAA] 245 (87.16)
42 + [CGCGCG] 497 (85.47)
42 + .CGGGAA. 501 (92.33)
42 + [CGCGCG] 511 (85.47)
43 + [CGCGCG] 237 (85.47)
43 + .CGCCAA. 312 (91.25)
43 + .CGCGAG. 439 (92.25)
43 + [GGCGAA] 450 (88.20)
43 + .CGCGAA. 507 (100.00)
44 + [AGCGAA] 83 (87.16)
44 + [CGCGAC] 341 (86.13)
44 + .CGCGCA. 426 (93.23)
44 + .CGCGAG. 436 (92.25)
44 + .CGCGAA. 536 (100.00)
45 + .CGGGAA. 58 (92.33)
45 + .CGCGCA. 336 (93.23)
46 + [CGCGAT] 79 (85.21)
46 + .CGCGAG. 132 (92.25)
46 + .CGCGAG. 258 (92.25)
46 + .CGCCAA. 356 (91.25)
46 + .CGCGAA. 411 (100.00)
46 + [AGCGAA] 505 (87.16)
47 + .CGCGCA. 324 (93.23)
47 + [CGTGAA] 493 (85.30)
47 + [CGCGCG] 507 (85.47)
47 + .CGCGAA. 509 (100.00)
48 + [CGCGCG] 389 (85.47)
48 + .CGCGAA. 400 (100.00)
49 + .CGCCAA. 386 (91.25)
49 + .CGCCAA. 421 (91.25)
49 + [CGCGCG] 442 (85.47)
50 + .CGCGAG. 470 (92.25)
51 + [CGAGAA] 30 (88.16)
51 + [CGCGCG] 74 (85.47)
51 + [CGCGCG] 76 (85.47)
51 + .CGCCAA. 93 (91.25)
51 + .CGCCAA. 112 (91.25)
51 + [CGCGAC] 120 (86.13)
51 + [CGGGCA] 244 (85.56)
51 + .CGCGAG. 305 (92.25)
51 + .CGCGCA. 312 (93.23)
51 + [CGCGCG] 367 (85.47)
51 + [CGCGCG] 369 (85.47)
51 + .CGCGCA. 427 (93.23)
52 + [CGCGCG] 372 (85.47)
52 + [CGCGCG] 385 (85.47)
52 + [CGCGCG] 398 (85.47)
52 + .CGGGAA. 455 (92.33)
53 + [GGCGAA] 266 (88.20)
54 + .CGCCAA. 298 (91.25)
54 + .CGGGAA. 332 (92.33)
54 + [CGGGCA] 485 (85.56)
55 + [CGTGAA] 173 (85.30)
55 + .CGCGGA. 367 (91.87)
55 + .CGCGCA. 380 (93.23)
55 + .CGCGGA. 395 (91.87)
55 + [CGCGCG] 443 (85.47)
56 + .CGGGAA. 277 (92.33)
57 + [CGGGCA] 122 (85.56)
57 + .CGCGCA. 188 (93.23)
57 + [CGCGCG] 312 (85.47)
57 + .CGCCAA. 316 (91.25)
57 + .CGCGGA. 348 (91.87)
57 + [CGCGCG] 389 (85.47)
57 + [CGCAAA] 413 (86.71)
58 + .CGCGAG. 59 (92.25)
58 + [CGCAAA] 142 (86.71)
58 + .CGCGAG. 150 (92.25)
58 + .CGCCAA. 321 (91.25)
58 + [CGCGCG] 452 (85.47)
58 + [CGCGCG] 454 (85.47)
59 + .CGCGAA. 283 (100.00)
59 + .CGCGCA. 297 (93.23)
59 + .CGGGAA. 491 (92.33)
60 + .CGCGAG. 264 (92.25)
60 + .CGCGGA. 291 (91.87)
60 + [CGGGCA] 356 (85.56)
60 + .CGCGCA. 406 (93.23)
60 + [CGCGCG] 429 (85.47)
60 + [CGGGCA] 433 (85.56)
61 + .CGGGAA. 492 (92.33)
62 + .CGCGGA. 407 (91.87)
62 + [CGCGCG] 475 (85.47)
62 + .CGCGGA. 524 (91.87)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		7	157	9	2	|		0	117	0	0
2		2	4	166	3	|		0	0	117	0
3		8	141	22	4	|		0	95	22	0
4		6	18	150	1	|		0	18	99	0
5		129	25	18	3	|		74	25	18	0
6		144	5	22	4	|		95	0	22	0

---

TTCGCGCG

9 redundant motifs found:
TTTTCGCGCG - TTTCGCGCGA - TTCGCGCGAA - CGCGCGAA - TTGGCGCG - TTTCGCGC - CGCGCG - TCGCGC - TTCGCG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [ATCCCGCG] 324 (85.13)
1 + .GCCGCGCG. 485 (90.18)
2 + .TCCGCGCG. 62 (95.51)
2 + .TCCCCGCG. 372 (90.04)
2 + .TTGGCGCG. 515 (92.34)
4 + [ACCGCGCG] 208 (86.11)
4 + [AGCGCGCG] 243 (86.37)
4 + [CTCGCGGG] 396 (85.92)
6 + [TTCCCGCC] 255 (85.89)
7 + [TTCCCGGG] 182 (85.99)
7 + [CTCCCGCG] 328 (88.99)
9 + [TTCCCGGG] 150 (85.99)
9 + [TTCCCGCC] 507 (85.89)
10 + [TTGCCGCG] 420 (86.88)
11 + .GGCGCGCG. 393 (90.44)
11 + [TGCGCGGG] 418 (87.23)
13 + .TTGGCGCG. 153 (92.34)
13 + [TGCGCGGG] 468 (87.23)
13 + [TTCCCGGG] 531 (85.99)
13 + [GTGGCGCG] 538 (87.01)
13 + .GGCGCGCG. 540 (90.44)
14 + .TCCCCGCG. 364 (90.04)
14 + .TTCCCGCG. 408 (94.53)
16 + [TTCGCGCA] 459 (86.01)
17 + .TTCGCGCC. 514 (91.36)
18 + [TTCGCCCG] 23 (88.86)
18 + [TTTGCGCG] 507 (88.97)
18 + [TGCGCGCC] 509 (87.13)
21 + .TGCGCGCG. 218 (95.77)
21 + [TTCGCGAG] 271 (88.87)
22 + [TCCGCGCC] 227 (86.87)
22 + .GGCGCGCG. 477 (90.44)
23 + .ATCGCGCG. 266 (90.59)
23 + .TTGGCGCG. 494 (92.34)
24 + .TGCGCGCG. 225 (95.77)
25 + .TTCGCGCC. 457 (91.36)
27 + .TTGGCGCG. 441 (92.34)
27 + .GGCGCGCG. 443 (90.44)
27 + [TTCCCGCC] 471 (85.89)
28 + [TCCGCGCC] 90 (86.87)
28 + .TTCCCGCG. 103 (94.53)
28 + .TCCGCGCG. 231 (95.51)
28 + [AGCGCGCG] 274 (86.37)
28 + .GCCGCGCG. 422 (90.18)
28 + .CGCGCGCG. 424 (90.23)
28 + [TTCCCGGG] 435 (85.99)
28 + [GTCGCGGG] 486 (86.13)
28 + [GACGCGCG] 507 (85.01)
29 + .GCCGCGCG. 172 (90.18)
29 + [CTCCCGCG] 188 (88.99)
29 + [GTCCCGCG] 219 (89.20)
29 + [TCGGCGCG] 249 (87.85)
29 + [CTCGCGGG] 320 (85.92)
29 + [GTCCCGCG] 389 (89.20)
29 + [CCCGCGCG] 391 (89.97)
29 + .TCCGCGCG. 455 (95.51)
30 + [GTGGCGCG] 75 (87.01)
30 + .GGCGCGCG. 77 (90.44)
31 + [TCCTCGCG] 179 (86.35)
31 + .GCCGCGCG. 494 (90.18)
31 + .CGCGCGCG. 496 (90.23)
32 + [CTCGCGCC] 474 (85.82)
34 + .TCCGCGCG. 320 (95.51)
34 + [TGCGCGGG] 368 (87.23)
34 + [TTGCCGCG] 404 (86.88)
35 + .TTGGCGCG. 348 (92.34)
35 + .TTGGCGCG. 410 (92.34)
35 + .GGCGCGCG. 492 (90.44)
36 + [CCCGCGCG] 21 (89.97)
36 + [CCCGCGCG] 90 (89.97)
36 + .TTCTCGCG. 170 (90.84)
36 + [CCCGCGCG] 193 (89.97)
36 + [CTCTCGCG] 253 (85.30)
36 + [CTCTCGCG] 351 (85.30)
36 + .TCCCCGCG. 422 (90.04)
36 + [CCCGCGCG] 424 (89.97)
37 + [TCGGCGCG] 91 (87.85)
37 + .GGCGCGCG. 141 (90.44)
38 + .TGCGCGCG. 304 (95.77)
38 + .TTGGCGCG. 484 (92.34)
40 + [GTCTCGCG] 405 (85.51)
40 + [CTCGCGGG] 407 (85.92)
40 + .GGCGCGCG. 513 (90.44)
40 + .CGCGCGCG. 515 (90.23)
42 + .GGCGCGCG. 495 (90.44)
42 + .GGCGCGCG. 509 (90.44)
42 + [TGCGCGGG] 518 (87.23)
43 + .TCCGCGCG. 235 (95.51)
43 + .TTCGCGCC. 308 (91.36)
43 + .TTCCCGCG. 503 (94.53)
44 + [GTCCCGCG] 432 (89.20)
45 + [GTCTCGCG] 216 (85.51)
45 + [CTCTCGCG] 463 (85.30)
45 + [CTCTCGCG] 484 (85.30)
45 + [CTCGCGGG] 486 (85.92)
46 + [GTCCCGCG] 254 (89.20)
47 + [TTCCCGGG] 472 (85.99)
47 + .TTCGCGCG. 505 (100.00)
48 + .GCCGCGCG. 387 (90.18)
48 + .TTGGCGCG. 396 (92.34)
49 + .TCCGCGCG. 440 (95.51)
50 + .TTCTCGCG. 466 (90.84)
51 + .GTCGCGCG. 72 (94.67)
51 + .CGCGCGCG. 74 (90.23)
51 + [ATCCCGCG] 167 (85.13)
51 + .TGCCCGCG. 265 (90.31)
51 + .GGCGCGCG. 365 (90.44)
51 + .CGCGCGCG. 367 (90.23)
51 + .TGCCCGCG. 504 (90.31)
51 + [TGCGCGCC] 541 (87.13)
52 + .GTCGCGCG. 383 (94.67)
52 + .GTCGCGCG. 396 (94.67)
53 + [CTCCCGCG] 517 (88.99)
55 + [TTGCCGCG] 439 (86.88)
55 + .GCCGCGCG. 441 (90.18)
57 + .TGCGCGCG. 310 (95.77)
57 + .TCCGCGCG. 387 (95.51)
58 + [AGCGCGCG] 450 (86.37)
58 + .CGCGCGCG. 452 (90.23)
58 + [TCCGCGCC] 479 (86.87)
59 + .TTCCCGCG. 279 (94.53)
59 + [GTCTCGCG] 503 (85.51)
60 + .TCCCCGCG. 60 (90.04)
60 + .GGCGCGCG. 427 (90.44)
62 + .TGCGCGCG. 473 (95.77)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		14	37	39	149	|		1	6	21	36
2		12	44	47	136	|		0	17	25	22
3		7	192	28	12	|		0	56	8	0
4		9	43	170	17	|		0	10	52	2
5		7	213	14	5	|		0	64	0	0
6		5	13	214	7	|		0	0	64	0
7		12	197	23	7	|		0	64	0	0
8		6	23	202	8	|		0	3	61	0

---

TTCGCGCGAA

8 redundant motifs found:
TTCGCGCGAAAC - TTTCGCGCGAAA - TCGCGCGAAA - TTGGCGCGTA - TTGGCGCGAA - TTTCGCGCGA - CGCGCGAA - TTCGCGCG -

Best occurrences (match percentage):
Seq St oligo pos match
2 + .TTGGCGCGAA. 515 (95.52)
7 + [TTCCCGGGAG] 182 (85.11)
10 + [TTGCCGCGAG] 420 (85.79)
13 + [TTGGCGCGAT] 153 (87.27)
13 + .TTGGCGCCAA. 480 (90.11)
14 + .TTCCCGCGAG. 408 (90.27)
15 + [TCAGCGCGAA] 280 (86.62)
19 + .TTGGCGCCAA. 405 (90.11)
19 + [ATCGCGAGAA] 452 (85.67)
21 + [TGCGCGCGCC] 218 (87.65)
21 + [TTCGCGAGAC] 271 (88.41)
23 + [TTGGCGGGAG] 459 (85.83)
23 + .TTGGCGCGAG. 494 (91.00)
25 + [TTCGCAGGAA] 466 (86.24)
27 + [TTGGCGCGCG] 441 (87.53)
27 + [TTCCCGCCAA] 471 (89.39)
28 + [TTCCCGCGGC] 103 (85.16)
29 + [TCGGCGCGCA] 249 (87.36)
29 + .TCCGCGCGCA. 455 (91.84)
31 + [CGCGCGCGCA] 496 (86.57)
34 + .TCCGCGCGAC. 320 (90.78)
34 + .TGCGCGGGAA. 368 (90.48)
35 + .TTGGCGCGAA. 348 (95.52)
35 + .TTGGCGCGAA. 410 (95.52)
35 + [GGCGCGCGCA] 492 (85.85)
38 + [TGCGCGCGCC] 304 (87.65)
38 + [TTCGCGGCAA] 467 (89.42)
38 + [TTGGCGCGTA] 484 (88.37)
42 + [TGCGCGGGAG] 518 (85.95)
43 + [TCCGCGCGCC] 235 (87.31)
43 + .TTCGCGCCAA. 308 (94.59)
43 + .TTCCCGCGAA. 503 (94.80)
46 + .TTGGCGCCAA. 352 (90.11)
46 + [TTACCGCGAA] 407 (86.12)
47 + .TTCGCGCGAA. 505 (100.00)
48 + .TTGGCGCGAA. 396 (95.52)
49 + [TCCGCGCGCC] 440 (87.31)
50 + [TTCTCGCGAG] 466 (88.56)
51 + [GTCGCGCGCG] 72 (85.68)
54 + .TTGGCGCCAA. 294 (90.11)
57 + [TGCGCGCGCC] 310 (87.65)
59 + .TTCCCGCGAA. 279 (94.80)
60 + [TTGGCGGGAC] 100 (85.83)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		9	15	12	85	|		0	0	0	17
2		6	18	20	77	|		0	2	1	14
3		6	88	22	5	|		0	8	9	0
4		9	17	85	10	|		0	3	14	0
5		0	113	5	3	|		0	17	0	0
6		7	7	100	7	|		0	0	17	0
7		10	89	18	4	|		0	16	1	0
8		5	18	96	2	|		0	5	12	0
9		73	25	15	8	|		16	1	0	0
10		77	19	19	6	|		14	1	2	0

---

TTTCGCGCGAAA

4 redundant motifs found:
TTCGCGCGAAAC - TCGCGCGAAA - TTTCGCGCGA - TTCGCGCGAA -

Best occurrences (match percentage):
Seq St oligo pos match
2 + [ATTGGCGCGAAG] 514 (86.35)
14 + [TTTCCCGCGAGA] 407 (89.91)
19 + .TTTGGCGCCAAA. 404 (91.65)
23 + [TTTGGCGCGAGC] 493 (85.07)
27 + [GTTCCCGCCAAA] 470 (86.37)
29 + [TTCCGCGCGCAG] 454 (89.52)
34 + [TTCCGCGCGACC] 319 (86.70)
35 + .TTTGGCGCGAAA. 347 (95.95)
35 + .TTTGGCGCGAAA. 409 (95.95)
38 + .TTTCGCGGCAAA. 466 (92.21)
38 + [TTTGGCGCGTAA] 483 (88.55)
43 + .TTTCGCGCCAAA. 307 (95.70)
43 + .TTTCCCGCGAAA. 502 (96.16)
46 + [TTTGGCGCCAAC] 351 (87.01)
47 + .TTTCGCGCGAAA. 504 (100.00)
48 + .GTTGGCGCGAAA. 395 (90.47)
51 + [TCTCCCGCCAAA] 88 (87.18)
54 + [TTTGGCGCCAAC] 293 (87.01)
59 + .TTTCCCGCGAAA. 278 (96.16)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		6	12	8	55	|		0	0	1	8
2		2	12	5	62	|		0	0	0	9
3		2	17	11	51	|		0	0	0	9
4		6	58	14	3	|		0	5	4	0
5		5	14	54	8	|		0	2	7	0
6		1	70	5	5	|		0	9	0	0
7		4	8	61	8	|		0	0	9	0
8		10	51	15	5	|		0	8	1	0
9		7	13	59	2	|		0	3	6	0
10		54	13	10	4	|		9	0	0	0
11		63	9	7	2	|		9	0	0	0
12		51	10	16	4	|		9	0	0	0

---

*** Interesting motifs (not highest-ranking) can also be :


TTTCGCGC

6 redundant motifs found:
TTTTCGCGCG - CGTTTCGCGC - TTTCGCGCGA - TTCGCGCG - TCGCGC - TTCGCG -

Best occurrences (match percentage):
Seq St oligo pos match
2 + [CTCCGCGC] 61 (87.20)
6 + .TTTCCCGC. 254 (93.27)
7 + [TCTCTCGC] 167 (85.10)
9 + .TTTCCCGC. 506 (93.27)
10 + [CTCCGCGC] 121 (87.20)
10 + [TTCGGCGC] 356 (87.01)
11 + [TCTCGCCC] 508 (85.25)
14 + [TTTGCCGC] 336 (85.54)
14 + [TCTCGCCC] 354 (85.25)
14 + .TTTCCCGC. 407 (93.27)
16 + .TTTCGCGC. 458 (100.00)
17 + [CTCCGCGC] 254 (87.20)
17 + .TTTCGCGC. 513 (100.00)
18 + .TTGCGCGC. 508 (91.64)
19 + .TTTGGCGC. 404 (92.27)
19 + [TCTCGCCC] 429 (85.25)
19 + [GTCCGCGC] 485 (86.37)
20 + [TGTCCCGC] 354 (85.38)
22 + [GTCCGCGC] 226 (86.37)
23 + .TTTGGCGC. 493 (92.27)
24 + [TCTCTCGC] 238 (85.10)
25 + .CTTCGCGC. 456 (92.46)
28 + .TTTCCCGC. 102 (93.27)
28 + [TCTCCCGC] 166 (87.52)
28 + [GTCCGCGC] 230 (86.37)
29 + [TTTGCCGC] 115 (85.54)
29 + [TCTCCCGC] 187 (87.52)
29 + [TCCCGCGC] 220 (88.99)
29 + [TCCCGCGC] 390 (88.99)
29 + .TTCCGCGC. 454 (94.74)
29 + [TGTCCCGC] 476 (85.38)
33 + [TTCCGCCC] 403 (85.73)
33 + [TGCCGCGC] 421 (86.84)
34 + .TTCCGCGC. 319 (94.74)
35 + .TTTGGCGC. 347 (92.27)
35 + .TTTGGCGC. 409 (92.27)
36 + [TGTCCCGC] 122 (85.38)
36 + [CTTCCCGC] 533 (85.73)
38 + .TTTCGCGG. 466 (90.64)
38 + .TTTGGCGC. 483 (92.27)
39 + [TTCCGCCC] 292 (85.73)
43 + [CTCCGCGC] 234 (87.20)
43 + .TTTCGCGC. 307 (100.00)
43 + .TTTCCCGC. 502 (93.27)
46 + .TTTGGCGC. 351 (92.27)
46 + [TCTCGCCC] 543 (85.25)
47 + .TTTCGCGC. 504 (100.00)
49 + [CTCCGCGC] 439 (87.20)
51 + [TCGCGCGC] 73 (85.90)
51 + [TCTCCCGC] 88 (87.52)
51 + [TCTCGCCC] 352 (85.25)
53 + [TCCCGCGC] 518 (88.99)
54 + [TTCCCCGC] 235 (88.01)
54 + .TTTGGCGC. 293 (92.27)
55 + [TGCCGCGC] 440 (86.84)
57 + [CTCCGCGC] 386 (87.20)
58 + [GTCCGCGC] 478 (86.37)
59 + .TTTCCCGC. 278 (93.27)
59 + [TGCCGCGC] 294 (86.84)
61 + [TTCCGCCC] 430 (85.73)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		10	22	18	137	|		0	1	0	21
2		7	32	19	129	|		0	0	0	22
3		5	36	17	129	|		0	2	1	19
4		5	150	23	9	|		0	15	7	0
5		7	27	138	15	|		0	6	16	0
6		12	159	9	7	|		0	22	0	0
7		6	17	151	13	|		0	0	22	0
8		8	155	16	8	|		0	21	1	0

---

TTTCGCGCGA

7 redundant motifs found:
TTTCGCGCGAAA - ATTGGCGCGA - TCGCGCGAAA - TTTTCGCGCG - TTCGCGCGAA - TTTCGCGC - TTCGCGCG -

Best occurrences (match percentage):
Seq St oligo pos match
2 + [CTCCGCGCGC] 61 (85.08)
2 + [ATTGGCGCGA] 514 (87.46)
9 + [TTTCCCGCCG] 506 (85.21)
13 + [ATTGGCGCGA] 152 (87.46)
14 + .TTTCCCGCGA. 407 (95.12)
17 + [TTTCGCGCCT] 513 (87.98)
19 + [TTTGGCGCCA] 404 (88.43)
21 + [CTTCGCGAGA] 270 (85.43)
23 + [TTTGGCGGGA] 458 (88.84)
23 + .TTTGGCGCGA. 493 (94.34)
28 + .TTTCCCGCGG. 102 (91.13)
29 + [TCCCGCGCGG] 390 (85.98)
29 + .TTCCGCGCGC. 454 (90.66)
34 + .TTCCGCGCGA. 319 (95.16)
35 + .TTTGGCGCGA. 347 (94.34)
35 + .TTTGGCGCGA. 409 (94.34)
38 + [TTTCGCGGCA] 466 (88.58)
38 + [TTTGGCGCGT] 483 (88.24)
43 + [CTCCGCGCGC] 234 (85.08)
43 + .TTTCGCGCCA. 307 (94.08)
43 + .TTTCCCGCGA. 502 (95.12)
45 + [TCTCGCGGGG] 485 (85.31)
46 + [TTTGGCGCCA] 351 (88.43)
47 + .TTTCGCGCGA. 504 (100.00)
48 + [GTTGGCGCGA] 395 (88.77)
49 + [CTCCGCGCGC] 439 (85.08)
50 + [GTTCTCGCGA] 465 (86.59)
51 + [TCTCGCCCGA] 352 (87.98)
54 + [TTTGGCGCCA] 293 (88.43)
57 + [CTCCGCGCGG] 386 (85.60)
59 + .TTTCCCGCGA. 278 (95.12)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		11	16	16	79	|		0	0	0	11
2		6	19	13	84	|		0	0	0	11
3		3	21	14	84	|		0	2	0	9
4		5	91	18	8	|		0	8	3	0
5		7	21	85	9	|		0	4	7	0
6		5	110	5	2	|		0	11	0	0
7		4	14	99	5	|		0	0	11	0
8		7	92	19	4	|		0	11	0	0
9		3	18	98	3	|		0	1	10	0
10		69	19	22	12	|		9	1	1	0

---

TTCGCGCGAAAC

3 redundant motifs found:
TTTCGCGCGAAA - TCGCGCGAAA - TTCGCGCGAA -

Best occurrences (match percentage):
Seq St oligo pos match
2 + [TTGGCGCGAAGT] 515 (86.68)
14 + [TTCCCGCGAGAA] 408 (85.70)
19 + .TTGGCGCCAAAC. 405 (91.02)
20 + [GGCGCGGGAAAC] 445 (85.59)
27 + [TTCCCGCCAAAT] 471 (85.11)
34 + [TGCGCGGGAAGC] 368 (87.78)
35 + [TTGGCGCGAAAT] 348 (89.52)
35 + [TTGGCGCGAAAT] 410 (89.52)
43 + [TTCGCGCCAAAT] 308 (88.89)
43 + .TTCCCGCGAAAC. 503 (96.22)
47 + .TTCGCGCGAAAC. 505 (100.00)
48 + [TTGGCGCGAAAG] 396 (89.82)
54 + [TTGGCGCCAACC] 294 (87.23)
59 + .TTCCCGCGAAAA. 279 (90.21)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		5	18	14	70	|		0	0	0	4
2		7	16	19	65	|		0	0	0	4
3		7	76	20	4	|		0	3	1	0
4		8	20	67	12	|		0	2	2	0
5		1	94	8	4	|		0	4	0	0
6		6	8	85	8	|		0	0	4	0
7		8	82	14	3	|		0	4	0	0
8		6	17	79	5	|		0	1	3	0
9		69	18	12	8	|		4	0	0	0
10		72	15	17	3	|		4	0	0	0
11		57	17	23	10	|		4	0	0	0
12		11	75	11	10	|		1	3	0	0

---

TTCGCG

5 redundant motifs found:
TTTCGCGC - TTCGCGCG - TGCGCG - CGCGCG - TCGCGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [CCCGCG] 326 (86.53)
1 + [TGGGCG] 446 (86.16)
1 + [CGCGCG] 487 (86.53)
1 + [CTGGCG] 532 (86.20)
2 + [CCCGCG] 15 (86.53)
2 + .TCCGCG. 62 (93.25)
2 + [CGCGCG] 64 (86.53)
2 + .TTCGCG. 126 (100.00)
2 + [TCCCCG] 372 (86.19)
2 + [CCCGCG] 374 (86.53)
2 + [TTAGCG] 412 (89.24)
2 + [TGGGCG] 453 (86.16)
2 + .TTGGCG. 515 (92.92)
3 + [TTGCCG] 495 (85.85)
3 + [TCCCCG] 505 (86.19)
4 + [TGCCCG] 165 (86.19)
4 + [ATCGCG] 182 (88.67)
4 + [CGCGCG] 210 (86.53)
4 + [CGCGCG] 245 (86.53)
4 + [TGCCCG] 290 (86.19)
4 + [TTAGCG] 386 (89.24)
4 + .CTCGCG. 396 (93.28)
4 + .TCCGCG. 478 (93.25)
5 + [CTGGCG] 164 (86.20)
5 + .TCCGCG. 342 (93.25)
6 + [TTCTCG] 31 (89.56)
6 + [TCCCCG] 217 (86.19)
6 + .TTCCCG. 255 (92.94)
6 + [CTCCCG] 268 (86.22)
7 + [CCCGCG] 8 (86.53)
7 + .TCCGCG. 97 (93.25)
7 + [TGGGCG] 104 (86.16)
7 + .TTCCCG. 182 (92.94)
7 + [CTCCCG] 328 (86.22)
7 + [CCCGCG] 330 (86.53)
7 + [CTCCCG] 339 (86.22)
8 + .TTTGCG. 35 (90.16)
8 + [CCCGCG] 232 (86.53)
8 + [CCCGCG] 284 (86.53)
8 + [CCCGCG] 375 (86.53)
8 + .TGCGCG. 447 (93.25)
8 + [CCCGCG] 498 (86.53)
9 + .TTCCCG. 150 (92.94)
9 + [TTCGAG] 434 (88.00)
9 + [TTGCCG] 464 (85.85)
9 + .TTCCCG. 507 (92.94)
10 + [CTCCCG] 6 (86.22)
10 + .TCCGCG. 122 (93.25)
10 + [TTAGCG] 203 (89.24)
10 + .TTTGCG. 209 (90.16)
10 + [TTCGCC] 257 (85.40)
10 + [TCCCCG] 273 (86.19)
10 + [TCCCCG] 288 (86.19)
10 + [TCGGCG] 357 (86.16)
10 + [CTGGCG] 374 (86.20)
10 + [TTGCCG] 420 (85.85)
11 + [CTCCCG] 352 (86.22)
11 + [CTGGCG] 360 (86.20)
11 + [CGCGCG] 395 (86.53)
11 + .TGCGCG. 418 (93.25)
13 + .TTGGCG. 153 (92.92)
13 + [CTCCCG] 402 (86.22)
13 + .TGCGCG. 468 (93.25)
13 + .TTGGCG. 480 (92.92)
13 + .TTCCCG. 531 (92.94)
13 + [CGCGCG] 542 (86.53)
14 + [CTCCCG] 235 (86.22)
14 + [TTGCCG] 337 (85.85)
14 + [TCCCCG] 364 (86.19)
14 + [CCCGCG] 366 (86.53)
14 + .TTCCCG. 408 (92.94)
14 + [CCCGCG] 410 (86.53)
14 + .TGCGCG. 521 (93.25)
15 + [CTGGCG] 32 (86.20)
15 + [TCGGCG] 125 (86.16)
15 + [TCCCCG] 143 (86.19)
15 + .CTCGCG. 511 (93.28)
16 + [CTGGCG] 373 (86.20)
16 + .TTCGCG. 459 (100.00)
16 + [CTGGCG] 520 (86.20)
16 + [TTCTCG] 534 (89.56)
17 + .TCCGCG. 255 (93.25)
17 + .CTCGCG. 283 (93.28)
17 + .TTCGCG. 514 (100.00)
17 + [TCGGCG] 522 (86.16)
18 + [TTCGCC] 23 (85.40)
18 + [TTGCCG] 368 (85.85)
18 + [TGGGCG] 402 (86.16)
18 + .TTTGCG. 507 (90.16)
18 + .TGCGCG. 509 (93.25)
18 + .TTGGCG. 528 (92.92)
19 + [TCCCCG] 32 (86.19)
19 + [TGGGCG] 350 (86.16)
19 + .TTGGCG. 405 (92.92)
19 + [TTCTCG] 428 (89.56)
19 + .TTCCCG. 443 (92.94)
19 + [ATCGCG] 452 (88.67)
19 + .TCCGCG. 486 (93.25)
19 + [CTGGCG] 528 (86.20)
20 + [TGGGCG] 399 (86.16)
20 + [TCCCCG] 439 (86.19)
20 + [TCCCCG] 506 (86.19)
21 + [TGCCCG] 203 (86.19)
21 + .TGCGCG. 218 (93.25)
21 + [CGCGCG] 220 (86.53)
21 + .TTCGCG. 271 (100.00)
21 + [TCGGCG] 429 (86.16)
21 + [CTCCCG] 438 (86.22)
22 + [TGCCCG] 132 (86.19)
22 + [GTCGCG] 150 (89.73)
22 + .TCCGCG. 227 (93.25)
22 + [CTGGCG] 314 (86.20)
22 + [TCCCCG] 322 (86.19)
22 + [CGCGCG] 479 (86.53)
22 + [CTGGCG] 486 (86.20)
23 + [CTGGCG] 49 (86.20)
23 + .TGCGCG. 188 (93.25)
23 + .TTTGCG. 222 (90.16)
23 + [ATCGCG] 266 (88.67)
23 + [CGCGCG] 268 (86.53)
23 + .TTGGCG. 459 (92.92)
23 + .TTGGCG. 494 (92.92)
24 + [TTCGAG] 2 (88.00)
24 + [CTCCCG] 69 (86.22)
24 + .TTTGCG. 181 (90.16)
24 + .TGCGCG. 225 (93.25)
24 + [CGCGCG] 227 (86.53)
24 + [TGGGCG] 449 (86.16)
25 + [ATCGCG] 11 (88.67)
25 + [TGGGCG] 33 (86.16)
25 + [TTCTCG] 200 (89.56)
25 + [TTCGAG] 263 (88.00)
25 + [TTGCCG] 295 (85.85)
25 + .TTCGCG. 457 (100.00)
26 + .TTCGCG. 31 (100.00)
26 + [CGCGCG] 51 (86.53)
26 + [TCCCCG] 82 (86.19)
26 + [TCCCCG] 128 (86.19)
26 + [TGCCCG] 150 (86.19)
26 + [CCCGCG] 186 (86.53)
26 + [CTGGCG] 337 (86.20)
27 + .CTCGCG. 323 (93.28)
27 + [TGGGCG] 339 (86.16)
27 + .CTCGCG. 373 (93.28)
27 + .TTCCCG. 402 (92.94)
27 + .TTGGCG. 441 (92.92)
27 + [CGCGCG] 445 (86.53)
27 + .TTCCCG. 471 (92.94)
28 + [CTCCCG] 58 (86.22)
28 + .TCCGCG. 90 (93.25)
28 + .TTCCCG. 103 (92.94)
28 + [CCCGCG] 105 (86.53)
28 + [CTCCCG] 167 (86.22)
28 + [TGCCCG] 201 (86.19)
28 + .TCCGCG. 231 (93.25)
28 + [CGCGCG] 233 (86.53)
28 + [ATCGCG] 262 (88.67)
28 + [CGCGCG] 276 (86.53)
28 + [CTGGCG] 414 (86.20)
28 + [CGCGCG] 424 (86.53)
28 + [CGCGCG] 426 (86.53)
28 + .TTCCCG. 435 (92.94)
28 + [TCCCCG] 458 (86.19)
28 + [CCCGCG] 479 (86.53)
28 + [GTCGCG] 486 (89.73)
28 + [CGCGCG] 509 (86.53)
29 + [CCCGCG] 65 (86.53)
29 + [CCCGCG] 94 (86.53)
29 + [TTGCCG] 116 (85.85)
29 + [CCCGCG] 152 (86.53)
29 + [CGCGCG] 174 (86.53)
29 + [CTCCCG] 188 (86.22)
29 + [CCCGCG] 190 (86.53)
29 + [CCCGCG] 214 (86.53)
29 + [CCCGCG] 221 (86.53)
29 + [CCCGCG] 228 (86.53)
29 + [CCCGCG] 235 (86.53)
29 + [TCGGCG] 249 (86.16)
29 + [TCCCCG] 305 (86.19)
29 + .CTCGCG. 320 (93.28)
29 + [CCCGCG] 391 (86.53)
29 + [CGCGCG] 393 (86.53)
29 + .TCCGCG. 455 (93.25)
29 + [CGCGCG] 457 (86.53)
30 + [TTCGAG] 6 (88.00)
30 + [CGCGCG] 79 (86.53)
30 + [TGGGCG] 182 (86.16)
31 + [TGCCCG] 93 (86.19)
31 + .CTCGCG. 181 (93.28)
31 + [CTCCCG] 243 (86.22)
31 + [ATCGCG] 489 (88.67)
31 + [CGCGCG] 496 (86.53)
31 + [CGCGCG] 498 (86.53)
32 + .TCCGCG. 59 (93.25)
32 + [TGCCCG] 65 (86.19)
32 + [TGCCCG] 347 (86.19)
32 + [TCCCCG] 380 (86.19)
32 + .TCCGCG. 444 (93.25)
32 + .CTCGCG. 474 (93.28)
32 + [CTCCCG] 511 (86.22)
33 + [CCCGCG] 356 (86.53)
33 + .TCCGCG. 382 (93.25)
33 + .TTGGCG. 517 (92.92)
33 + .TTTGCG. 543 (90.16)
34 + .TGCGCG. 304 (93.25)
34 + .TCCGCG. 320 (93.25)
34 + [CGCGCG] 322 (86.53)
34 + .TGCGCG. 368 (93.25)
34 + [TTGCCG] 404 (85.85)
34 + [GTCGCG] 528 (89.73)
35 + [TTCGCT] 9 (85.40)
35 + [CCCGCG] 281 (86.53)
35 + .TTGGCG. 348 (92.92)
35 + .TTGGCG. 410 (92.92)
35 + [CGCGCG] 494 (86.53)
36 + [CCCGCG] 21 (86.53)
36 + [CGCGCG] 23 (86.53)
36 + [CCCGCG] 90 (86.53)
36 + [CGCGCG] 92 (86.53)
36 + [TCCCCG] 159 (86.19)
36 + [TTCTCG] 170 (89.56)
36 + .CTCGCG. 172 (93.28)
36 + [CCCGCG] 193 (86.53)
36 + [CGCGCG] 195 (86.53)
36 + .CTCGCG. 255 (93.28)
36 + .CTCGCG. 353 (93.28)
36 + [TCCCCG] 422 (86.19)
36 + [CCCGCG] 424 (86.53)
36 + [CGCGCG] 426 (86.53)
36 + [CTGGCG] 442 (86.20)
36 + [TTCGAG] 484 (88.00)
36 + .TTCCCG. 516 (92.94)
36 + .TTCCCG. 534 (92.94)
37 + [TCGGCG] 91 (86.16)
37 + [CGCGCG] 103 (86.53)
37 + [CGCGCG] 143 (86.53)
37 + [CTCCCG] 283 (86.22)
37 + [CTCCCG] 486 (86.22)
37 + [CTGGCG] 513 (86.20)
38 + .TGCGCG. 304 (93.25)
38 + [CGCGCG] 306 (86.53)
38 + [CCCGCG] 338 (86.53)
38 + .TTCCCG. 412 (92.94)
38 + [TCGGCG] 449 (86.16)
38 + .TTCGCG. 467 (100.00)
38 + .TTGGCG. 484 (92.92)
39 + [CTCCCG] 351 (86.22)
39 + [TGCCCG] 489 (86.19)
40 + [CTGGCG] 301 (86.20)
40 + [TGGGCG] 365 (86.16)
40 + .CTCGCG. 407 (93.28)
40 + [TCGGCG] 483 (86.16)
40 + [CGCGCG] 515 (86.53)
40 + [CGCGCG] 517 (86.53)
41 + [CTCCCG] 83 (86.22)
42 + .TTGGCG. 377 (92.92)
42 + [TGGGCG] 391 (86.16)
42 + [CGCGCG] 497 (86.53)
42 + [CGCGCG] 511 (86.53)
42 + .TGCGCG. 518 (93.25)
43 + [TCCCCG] 62 (86.19)
43 + [TCCCCG] 152 (86.19)
43 + .TCCGCG. 235 (93.25)
43 + [CGCGCG] 237 (86.53)
43 + .TTTGCG. 260 (90.16)
43 + .TTCGCG. 308 (100.00)
43 + .TTCCCG. 503 (92.94)
43 + [CCCGCG] 505 (86.53)
43 + [TCGGCG] 515 (86.16)
44 + [TTAGCG] 81 (89.24)
44 + [CCCGCG] 383 (86.53)
44 + [CCCGCG] 424 (86.53)
44 + [CCCGCG] 434 (86.53)
44 + [TCGGCG] 449 (86.16)
44 + [TGGGCG] 511 (86.16)
45 + [CTCCCG] 116 (86.22)
45 + .CTCGCG. 218 (93.28)
45 + .TGCGCG. 235 (93.25)
45 + [TGGGCG] 299 (86.16)
45 + .CTCGCG. 465 (93.28)
45 + .CTCGCG. 486 (93.28)
45 + [TTAGCG] 496 (89.24)
45 + [TTAGCG] 544 (89.24)
46 + .CTCGCG. 77 (93.28)
46 + [TCCCCG] 198 (86.19)
46 + [CCCGCG] 256 (86.53)
46 + .TTGGCG. 352 (92.92)
47 + [CTCCCG] 19 (86.22)
47 + [TGGGCG] 358 (86.16)
47 + [GTCGCG] 453 (89.73)
47 + .TTCCCG. 472 (92.94)
47 + .TTCGCG. 505 (100.00)
47 + [CGCGCG] 507 (86.53)
48 + .TTCCCG. 81 (92.94)
48 + [CGCGCG] 389 (86.53)
48 + .TTGGCG. 396 (92.92)
48 + .TTCCCG. 412 (92.94)
48 + [CTGGCG] 499 (86.20)
49 + [TTCGCC] 419 (85.40)
49 + .TCCGCG. 440 (93.25)
49 + [CGCGCG] 442 (86.53)
49 + [TTAGCG] 464 (89.24)
49 + [TGCCCG] 505 (86.19)
49 + .TTGGCG. 513 (92.92)
49 + [TTCTCG] 538 (89.56)
50 + .TTCCCG. 335 (92.94)
50 + [TTCTCG] 466 (89.56)
50 + .CTCGCG. 468 (93.28)
51 + [GTCGCG] 72 (89.73)
51 + [CGCGCG] 74 (86.53)
51 + [CGCGCG] 76 (86.53)
51 + [CTCCCG] 89 (86.22)
51 + [CCCGCG] 144 (86.53)
51 + [CCCGCG] 169 (86.53)
51 + [CTCCCG] 228 (86.22)
51 + .TTCGCG. 257 (100.00)
51 + [TGCCCG] 265 (86.19)
51 + [CCCGCG] 267 (86.53)
51 + .CTCGCG. 303 (93.28)
51 + [CGCGCG] 367 (86.53)
51 + [CGCGCG] 369 (86.53)
51 + [TGCCCG] 504 (86.19)
51 + [CCCGCG] 506 (86.53)
51 + .TGCGCG. 541 (93.25)
52 + [TTCGCT] 334 (85.40)
52 + [CGCGCG] 372 (86.53)
52 + [GTCGCG] 383 (89.73)
52 + [CGCGCG] 385 (86.53)
52 + [GTCGCG] 396 (89.73)
52 + [CGCGCG] 398 (86.53)
53 + .TTTGCG. 51 (90.16)
53 + [TTCGCT] 75 (85.40)
53 + [CTCCCG] 358 (86.22)
53 + [CTCCCG] 517 (86.22)
53 + [CCCGCG] 519 (86.53)
54 + [TCCCCG] 236 (86.19)
54 + .TTGGCG. 294 (92.92)
54 + [TGGGCG] 345 (86.16)
54 + .TTTGCG. 362 (90.16)
55 + .TGCGCG. 378 (93.25)
55 + [TTGCCG] 439 (85.85)
55 + [CGCGCG] 443 (86.53)
55 + [CTGGCG] 450 (86.20)
55 + [TGGGCG] 498 (86.16)
55 + [TTCTCG] 504 (89.56)
56 + [TCCCCG] 114 (86.19)
56 + .TGCGCG. 394 (93.25)
56 + [TGGGCG] 519 (86.16)
57 + [TGCCCG] 89 (86.19)
57 + [TCCCCG] 159 (86.19)
57 + [TCCCCG] 171 (86.19)
57 + .CTCGCG. 215 (93.28)
57 + [CCCGCG] 285 (86.53)
57 + [TCCCCG] 295 (86.19)
57 + .TGCGCG. 310 (93.25)
57 + [CGCGCG] 312 (86.53)
57 + .TGCGCG. 346 (93.25)
57 + .TCCGCG. 387 (93.25)
57 + [CGCGCG] 389 (86.53)
57 + [CTCCCG] 427 (86.22)
57 + .CTCGCG. 453 (93.28)
58 + [TGCCCG] 82 (86.19)
58 + [TGGGCG] 393 (86.16)
58 + [CGCGCG] 452 (86.53)
58 + [CGCGCG] 454 (86.53)
58 + .TCCGCG. 479 (93.25)
58 + [TGGGCG] 496 (86.16)
59 + [TGCCCG] 23 (86.19)
59 + [TTCGAG] 77 (88.00)
59 + [CTCCCG] 120 (86.22)
59 + .TTCCCG. 279 (92.94)
59 + [CCCGCG] 281 (86.53)
59 + [CTCCCG] 412 (86.22)
59 + [TTGCCG] 481 (85.85)
59 + .CTCGCG. 505 (93.28)
59 + .TCCGCG. 545 (93.25)
60 + [TCCCCG] 37 (86.19)
60 + [TCCCCG] 60 (86.19)
60 + [CCCGCG] 62 (86.53)
60 + .TTGGCG. 100 (92.92)
60 + [CTGGCG] 251 (86.20)
60 + .TGCGCG. 262 (93.25)
60 + [CGCGCG] 429 (86.53)
60 + .TTGGCG. 536 (92.92)
61 + [GTCGCG] 158 (89.73)
62 + [CTGGCG] 371 (86.20)
62 + .TGCGCG. 473 (93.25)
62 + [CGCGCG] 475 (86.53)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		6	21	8	130	|		0	21	0	98
2		0	20	20	125	|		0	20	20	79
3		7	130	19	9	|		0	91	19	9
4		1	20	136	8	|		0	20	99	0
5		6	156	2	1	|		0	119	0	0
6		1	3	158	3	|		0	0	119	0

---

TTGGCGCG

5 redundant motifs found:
ATTGGCGCGA - TTGGCGCGTA - TTGGCGCGAA - GGCGCGAA - TTCGCGCG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TGGGCGGG] 446 (86.49)
2 + [TCCGCGCG] 62 (87.76)
2 + [TGGGCGGG] 453 (86.49)
2 + [TGGGGGCG] 495 (86.32)
2 + .TTGGCGCG. 515 (100.00)
3 + .TAGGCGCG. 459 (91.66)
5 + [GTGGCGGG] 55 (85.47)
7 + [GTGGGGCG] 397 (85.30)
7 + [ATGGCGCG] 412 (89.30)
7 + [CGGGCGCG] 452 (88.45)
8 + [CGGGCGCG] 379 (88.45)
8 + .TAGGCGCG. 401 (91.66)
10 + [TCGGCCCG] 151 (86.47)
10 + [TCGGCGCC] 357 (87.52)
10 + .TTGCCGCG. 420 (91.75)
11 + [GCGGCGCG] 391 (89.53)
13 + .TTGGCGCG. 153 (100.00)
13 + .TTGGCGCC. 480 (92.24)
13 + .GTGGCGCG. 538 (94.25)
15 + [CCGGCGCG] 470 (88.45)
17 + [GCGGCGCG] 525 (89.53)
18 + [TGGGCGGG] 402 (86.49)
18 + [CGGGCGCG] 495 (88.45)
18 + [TTTGCGCG] 507 (88.96)
18 + [TTGGCGTG] 528 (85.29)
19 + .TTGGCGCC. 405 (92.24)
20 + [CGGGCGCG] 443 (88.45)
21 + [GCGGCGCG] 168 (89.53)
21 + [TGCGCGCG] 218 (87.76)
21 + [TCGGCGGG] 429 (86.49)
22 + [GGGGCGCG] 433 (89.53)
22 + [GTGGGGCG] 473 (85.30)
22 + [GGGGCGCG] 475 (89.53)
23 + .TTGGCGGG. 459 (91.22)
23 + .TTGGCGCG. 494 (100.00)
24 + [TGCGCGCG] 225 (87.76)
24 + [TTGGCTCG] 431 (89.09)
24 + [TGGGCGCC] 449 (87.52)
27 + .TTGGCGCG. 441 (100.00)
27 + [TCGCCGCG] 462 (87.02)
27 + [GCGGCGCG] 510 (89.53)
28 + [TCCGCGCG] 231 (87.76)
29 + .TCGGCGCG. 249 (95.27)
29 + [TCCGCGCG] 455 (87.76)
29 + [CCGGCGCG] 506 (88.45)
30 + .GTGGCGCG. 75 (94.25)
33 + [GTGCCGCG] 420 (86.00)
33 + .TTGGCGGG. 517 (91.22)
34 + [TCCGCGCG] 320 (87.76)
34 + .TTGCCGCG. 404 (91.75)
35 + .TTGGCGCG. 348 (100.00)
35 + .TTGGCGCG. 410 (100.00)
35 + [GCGGCGCG] 490 (89.53)
37 + [TCGGCCCG] 41 (86.47)
37 + [TCGCCGCG] 52 (87.02)
37 + .TCGGCGCG. 91 (95.27)
37 + [GAGGCGCG] 139 (85.91)
37 + [GAGGCGCG] 413 (85.91)
37 + [CTGGCGCC] 513 (85.41)
38 + [TCGGGGCG] 197 (86.32)
38 + [TGGGGGCG] 258 (86.32)
38 + [TGCGCGCG] 304 (87.76)
38 + [CCGGCGCG] 376 (88.45)
38 + .TTGGCGCG. 484 (100.00)
40 + [CCGGCGCG] 511 (88.45)
42 + [TGGGCGGG] 391 (86.49)
42 + [GCGGCGCG] 493 (89.53)
42 + [GCGGCGCG] 507 (89.53)
43 + [TCCGCGCG] 235 (87.76)
43 + [TGGCCGCG] 435 (87.02)
44 + [TGGGCCCG] 403 (86.47)
44 + [TGGGCGGG] 511 (86.49)
44 + [GTGGGGCG] 542 (85.30)
46 + [GTGGGGCG] 11 (85.30)
46 + [TGGGGGCG] 25 (86.32)
46 + .TTGGCGCC. 352 (92.24)
47 + .TTCGCGCG. 505 (92.49)
48 + .TTGGCGCG. 396 (100.00)
48 + [CTGGCGCC] 499 (85.41)
49 + [GTGGCGCC] 382 (86.50)
49 + [TCCGCGCG] 440 (87.76)
50 + [TCGGGGCG] 456 (86.32)
50 + [GGGGCGCG] 458 (89.53)
51 + [GTCGCGCG] 72 (86.74)
51 + [GAGGCGCG] 308 (85.91)
51 + [GTGGCCCG] 340 (85.45)
51 + [CCGGCGCG] 363 (88.45)
51 + [TGGGGGCG] 416 (86.32)
51 + [GGGGCGCG] 423 (89.53)
51 + [CCGGCGCG] 446 (88.45)
52 + [GTCGCGCG] 383 (86.74)
52 + [GCGGCGCG] 388 (89.53)
52 + [GTCGCGCG] 396 (86.74)
52 + [GCGGCGCG] 435 (89.53)
54 + .TTGGCGCC. 294 (92.24)
55 + .TTGCCGCG. 439 (91.75)
56 + [GTGGCGCC] 469 (86.50)
56 + [TGGGCGCC] 519 (87.52)
57 + [GCGGCGCG] 218 (89.53)
57 + [TGCGCGCG] 310 (87.76)
57 + [GGGGCGCG] 354 (89.53)
57 + [TCCGCGCG] 387 (87.76)
59 + [GTGGCGCC] 405 (86.50)
60 + .TTGGCGGG. 100 (91.22)
60 + [GTGGCGGG] 398 (85.47)
60 + [CGGGCGCG] 402 (88.45)
60 + [GCGGCGCG] 425 (89.53)
60 + .TTGGCGCC. 536 (92.24)
62 + [CTGGCGCC] 371 (85.41)
62 + [TGCGCGCG] 473 (87.76)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		11	29	38	160	|		0	0	2	24
2		17	42	42	137	|		2	2	0	22
3		7	29	190	12	|		0	1	25	0
4		6	25	197	10	|		0	3	23	0
5		12	197	21	8	|		0	26	0	0
6		4	22	199	13	|		0	0	26	0
7		13	198	22	5	|		0	23	3	0
8		10	27	188	13	|		0	5	21	0

---

TTGGCGCGAA

7 redundant motifs found:
GATTGGCGCGAA - GTTTGGCGCGAA - ATTGGCGCGA - TTGGCGCGTA - TTCGCGCGAA - GGCGCGAA - TTGGCGCG -

Best occurrences (match percentage):
Seq St oligo pos match
2 + .TTGGCGCGAA. 515 (100.00)
3 + [TAGGCGCGAG] 459 (88.83)
7 + [ATGGCGCGCA] 412 (86.26)
10 + [TTGCCGCGAG] 420 (89.89)
13 + [TTGGCGCGAT] 153 (88.70)
13 + .TTGGCGCCAA. 480 (93.95)
19 + .TTGGCGCCAA. 405 (93.95)
22 + [CTGCCGGGAA] 354 (85.45)
23 + .TTGGCGGGAG. 459 (90.58)
23 + .TTGGCGCGAG. 494 (95.12)
27 + [TTGGCGCGCG] 441 (89.79)
29 + [TCGGCGCGCA] 249 (88.62)
35 + .TTGGCGCGAA. 348 (100.00)
35 + .TTGGCGCGAA. 410 (100.00)
37 + [GGGGCGGGAA] 439 (85.03)
38 + .TTGGCGCGTA. 484 (91.64)
43 + [TTCGCGCCAA] 308 (86.54)
43 + [TTCCCGCGAA] 503 (87.37)
46 + .TTGGCGCCAA. 352 (93.95)
47 + .TTCGCGCGAA. 505 (92.59)
48 + .TTGGCGCGAA. 396 (100.00)
49 + [GTGGCGCCAA] 382 (89.16)
54 + .TTGGCGCCAA. 294 (93.95)
56 + [CTGCCGGGAA] 273 (85.45)
59 + [TTCCCGCGAA] 279 (87.37)
60 + [TTGGCGGGAC] 100 (88.65)
60 + [CTGGCGGGAG] 251 (85.78)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		8	22	22	84	|		0	0	0	12
2		15	16	18	87	|		0	0	0	12
3		6	14	111	5	|		0	1	11	0
4		4	23	99	10	|		0	0	12	0
5		10	116	4	6	|		0	12	0	0
6		6	5	113	12	|		0	0	12	0
7		7	96	27	6	|		0	11	1	0
8		9	19	103	5	|		0	4	8	0
9		93	21	13	9	|		11	0	0	1
10		94	14	24	4	|		10	0	2	0

---

GCGCGA

7 redundant motifs found:
CGCGCGAA - GCGCGAAA - GGCGCGAA - GCGCGT - TGCGCG - CGCGCG - CGCGAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GCGGGG] 377 (87.42)
1 + [GCGGGG] 449 (87.42)
1 + [GGGCGA] 452 (87.42)
1 + .GCGCGG. 488 (95.47)
1 + [GCGGGG] 490 (87.42)
2 + .GCGCGC. 65 (95.34)
2 + [GCGGGG] 456 (87.42)
2 + [GGGCGA] 459 (87.42)
2 + [GCGGGG] 500 (87.42)
2 + .GCGCGA. 518 (100.00)
3 + [GCCCGA] 132 (87.80)
3 + .GCGCGA. 462 (100.00)
4 + .GCGCGG. 211 (95.47)
4 + .GCGGGA. 213 (91.95)
4 + .GCGCGC. 244 (95.34)
4 + .GCGCGC. 246 (95.34)
4 + [GCGGGG] 399 (87.42)
4 + .GCGGGA. 445 (91.95)
4 + [CCGCGA] 479 (87.11)
5 + [GCGGGC] 58 (87.28)
5 + [GAGCGA] 173 (86.10)
5 + [GCGAGA] 180 (85.65)
5 + [GCCCGA] 434 (87.80)
6 + [GGGCGA] 320 (87.42)
6 + [GCGAGA] 322 (85.65)
6 + [GAGCGA] 392 (86.10)
6 + .GCGGGA. 476 (91.95)
7 + [GCCCGA] 353 (87.80)
7 + [GCGGGG] 402 (87.42)
7 + [GCCCGA] 407 (87.80)
7 + .GCGCGC. 415 (95.34)
7 + .GCGCGG. 455 (95.47)
7 + [GCGGGG] 457 (87.42)
7 + [GCGGGG] 462 (87.42)
7 + [GCCCGA] 481 (87.80)
8 + [GCGGGG] 249 (87.42)
8 + [GCGGGG] 287 (87.42)
8 + [GCGGGC] 378 (87.28)
8 + .GCGCGA. 382 (100.00)
8 + .GCGGGA. 391 (91.95)
8 + .GCGCGG. 404 (95.47)
8 + [GCGCGT] 448 (88.40)
9 + .GCGGGA. 516 (91.95)
10 + [GCGCCA] 176 (89.34)
10 + .GCGGGA. 410 (91.95)
10 + [CCGCGA] 423 (87.11)
11 + [GGGCGA] 202 (87.42)
11 + .GCGCGC. 394 (95.34)
11 + .GCGCGG. 396 (95.47)
11 + [GCGGGG] 398 (87.42)
11 + [GCGGGG] 403 (87.42)
11 + .GCGCGG. 419 (95.47)
11 + [GCGGGG] 421 (87.42)
11 + [GCGGGG] 426 (87.42)
11 + [GCGGGC] 431 (87.28)
13 + .GCGCGA. 156 (100.00)
13 + .GCGCGG. 469 (95.47)
13 + [GCGGGC] 471 (87.28)
13 + [GCGCCA] 483 (89.34)
13 + .GCGCGC. 541 (95.34)
13 + [GCGCGT] 543 (88.40)
14 + [CCGCGA] 411 (87.11)
14 + [GCGAGA] 413 (85.65)
14 + .GCGCGG. 522 (95.47)
15 + .GCGCGG. 76 (95.47)
15 + .GCGGGA. 81 (91.95)
15 + [GCGGGC] 206 (87.28)
15 + [GCGGGG] 255 (87.42)
15 + .GCGCGA. 283 (100.00)
15 + [GAGCGA] 427 (86.10)
15 + [GCGAGA] 429 (85.65)
15 + [GCGGGC] 442 (87.28)
15 + [GCGGGC] 446 (87.28)
15 + [GCGCGT] 473 (88.40)
15 + [TCGCGA] 512 (85.69)
16 + [GCGGGG] 436 (87.42)
17 + [GAGCGA] 26 (86.10)
17 + [GCGAGA] 28 (85.65)
17 + [TCGCGA] 284 (85.69)
17 + .GCGGGA. 346 (91.95)
17 + .GCGCGG. 528 (95.47)
18 + [GCGGGC] 405 (87.28)
18 + [GAGCGA] 459 (86.10)
18 + .GCGCGG. 498 (95.47)
18 + .GCGCGC. 510 (95.34)
19 + [GAGCGA] 204 (86.10)
19 + [GCGAGA] 206 (85.65)
19 + .GCGGGA. 335 (91.95)
19 + [GCGCCA] 408 (89.34)
19 + [GCGGGC] 420 (87.28)
19 + [TCGCGA] 453 (85.69)
19 + [GCGAGA] 455 (85.65)
19 + .GCGCGC. 462 (95.34)
19 + [GCGGGC] 531 (87.28)
20 + [GCCCGA] 410 (87.80)
20 + .GCGCGG. 446 (95.47)
20 + .GCGGGA. 448 (91.95)
21 + [GCGGGG] 143 (87.42)
21 + .GCGCGC. 171 (95.34)
21 + .GCGCGC. 219 (95.34)
21 + .GCGCGC. 221 (95.34)
21 + [GCGGGG] 239 (87.42)
21 + [TCGCGA] 272 (85.69)
21 + [GCGAGA] 274 (85.65)
21 + [GCGGGC] 292 (87.28)
21 + [GCGGGG] 296 (87.42)
21 + [GCGGGG] 340 (87.42)
21 + .GCGCGG. 362 (95.47)
21 + .GCGGGA. 432 (91.95)
21 + [GCGGGG] 450 (87.42)
21 + .GCGGGA. 455 (91.95)
22 + [GCCCGA] 133 (87.80)
22 + .GCGGGA. 398 (91.95)
22 + .GCGCGG. 436 (95.47)
22 + .GCGGGA. 438 (91.95)
22 + .GCGCGC. 478 (95.34)
22 + .GCGCGC. 480 (95.34)
22 + [GCGGGC] 508 (87.28)
23 + .GCGCGG. 189 (95.47)
23 + [GCGGGC] 228 (87.28)
23 + [GCGCGT] 269 (88.40)
23 + .GCGGGA. 462 (91.95)
23 + .GCGCGA. 497 (100.00)
23 + .GCGCGG. 503 (95.47)
24 + .GCGCGC. 226 (95.34)
24 + .GCGCGC. 228 (95.34)
24 + [GAGCGA] 266 (86.10)
24 + [GCGGGG] 419 (87.42)
25 + [GCGCCA] 14 (89.34)
25 + [GGGCGA] 34 (87.42)
25 + [GAGCGA] 42 (86.10)
25 + [GCGAGA] 44 (85.65)
25 + [GGGCGA] 390 (87.42)
26 + [GCGGGC] 5 (87.28)
26 + [TCGCGA] 32 (85.69)
26 + .GCGCGC. 52 (95.34)
26 + [GCGCCA] 109 (89.34)
26 + [GCGGGG] 324 (87.42)
26 + [GCGGGG] 330 (87.42)
26 + [GCGGGG] 367 (87.42)
26 + [GCGGGC] 395 (87.28)
26 + .GCGGGA. 410 (91.95)
26 + [GCGGGG] 423 (87.42)
26 + [GCGGGG] 435 (87.42)
26 + [GCGGGG] 440 (87.42)
27 + [GGGCGA] 340 (87.42)
27 + [TCGCGA] 374 (85.69)
27 + [GCGGGC] 410 (87.28)
27 + .GCGCGC. 444 (95.34)
27 + .GCGCGG. 446 (95.47)
27 + [GCGGGG] 455 (87.42)
27 + .GCGCGG. 487 (95.47)
27 + .GCGCGG. 513 (95.47)
27 + [GCGGGC] 515 (87.28)
27 + .GCGGGA. 519 (91.95)
27 + [GGGCGA] 525 (87.42)
28 + [GCGGGG] 2 (87.42)
28 + [GCCCGA] 151 (87.80)
28 + [GCGCGT] 234 (88.40)
28 + [TCGCGA] 263 (85.69)
28 + .GCGCGC. 275 (95.34)
28 + .GCGCGG. 277 (95.47)
28 + [GCGGGG] 279 (87.42)
28 + .GCGCGG. 314 (95.47)
28 + .GCGCGC. 425 (95.34)
28 + .GCGCGC. 427 (95.34)
28 + [GCGGGC] 489 (87.28)
28 + .GCGCGG. 510 (95.47)
29 + [GCCCGA] 58 (87.80)
29 + [GCGCCA] 97 (89.34)
29 + .GCGCGC. 175 (95.34)
29 + [GCGCCA] 177 (89.34)
29 + .GCGCGC. 252 (95.34)
29 + [GCGGGC] 323 (87.28)
29 + [GCGGGG] 356 (87.42)
29 + [GGGCGA] 359 (87.42)
29 + .GCGGGA. 373 (91.95)
29 + .GCGCGG. 394 (95.47)
29 + [GCGGGG] 423 (87.42)
29 + [GCGGGC] 439 (87.28)
29 + .GCGCGC. 458 (95.34)
29 + .GCGCGG. 509 (95.47)
29 + .GCGCGG. 521 (95.47)
29 + .GCGCGG. 539 (95.47)
30 + .GCGCGC. 78 (95.34)
30 + .GCGCGC. 80 (95.34)
30 + [GGGCGA] 183 (87.42)
30 + [GCGGGC] 382 (87.28)
31 + .GCGCGC. 497 (95.34)
31 + .GCGCGC. 499 (95.34)
32 + [GCCCGA] 66 (87.80)
32 + [GCGGGG] 288 (87.42)
32 + .GCGCGC. 438 (95.34)
32 + [GCCCGA] 479 (87.80)
33 + .GCGCGA. 99 (100.00)
33 + .GCGGGA. 277 (91.95)
34 + [GCGCGT] 305 (88.40)
34 + .GCGCGA. 323 (100.00)
34 + .GCGCGG. 369 (95.47)
34 + .GCGGGA. 371 (91.95)
34 + .GCGGGA. 502 (91.95)
35 + [GCGGGC] 284 (87.28)
35 + .GCGCGA. 351 (100.00)
35 + .GCGCGA. 413 (100.00)
35 + [GCGGGG] 473 (87.42)
35 + .GCGCGC. 493 (95.34)
35 + .GCGCGC. 495 (95.34)
36 + .GCGCGC. 24 (95.34)
36 + .GCGCGC. 93 (95.34)
36 + [GCGCCA] 95 (89.34)
36 + .GCGCGC. 196 (95.34)
36 + .GCGCGC. 427 (95.34)
36 + .GCGGGA. 464 (91.95)
37 + [GCCCGA] 44 (87.80)
37 + [CCGCGA] 55 (87.11)
37 + .GCGCGG. 94 (95.47)
37 + [GCGGGC] 96 (87.28)
37 + .GCGCGG. 104 (95.47)
37 + .GCGCGC. 142 (95.34)
37 + .GCGCGG. 144 (95.47)
37 + [GCGGGG] 243 (87.42)
37 + [GAGCGA] 302 (86.10)
37 + [GCGCCA] 321 (89.34)
37 + [GGGCGA] 377 (87.42)
37 + [GCGGGG] 388 (87.42)
37 + [GCGGGG] 393 (87.42)
37 + .GCGCGC. 416 (95.34)
37 + .GCGGGA. 442 (91.95)
38 + .GCGGGA. 188 (91.95)
38 + [GCGGGG] 202 (87.42)
38 + [GCGGGG] 207 (87.42)
38 + [GCGGGG] 263 (87.42)
38 + .GCGCGC. 305 (95.34)
38 + .GCGCGC. 307 (95.34)
38 + [GCGCGT] 379 (88.40)
38 + [GCGCGT] 487 (88.40)
38 + .GCGGGA. 536 (91.95)
39 + .GCGCGG. 153 (95.47)
39 + .GCGCGG. 329 (95.47)
39 + .GCGCGG. 365 (95.47)
39 + .GCGCGG. 372 (95.47)
40 + [GCGCCA] 176 (89.34)
40 + [GCGGGC] 208 (87.28)
40 + [GCGCCA] 336 (89.34)
40 + [GCGGGC] 396 (87.28)
40 + [GCGGGC] 410 (87.28)
40 + [GCGGGG] 446 (87.42)
40 + [GCGGGG] 458 (87.42)
40 + .GCGGGA. 475 (91.95)
40 + [GCGCCA] 491 (89.34)
40 + [GCGGGC] 505 (87.28)
40 + .GCGCGC. 514 (95.34)
40 + .GCGCGC. 516 (95.34)
40 + .GCGCGG. 518 (95.47)
40 + .GCGGGA. 520 (91.95)
42 + [GCGCCA] 187 (89.34)
42 + [GAGCGA] 244 (86.10)
42 + [GCGGGG] 394 (87.42)
42 + .GCGGGA. 426 (91.95)
42 + [GCGGGG] 451 (87.42)
42 + [GCGGGG] 478 (87.42)
42 + [GCGGGG] 484 (87.42)
42 + .GCGCGC. 496 (95.34)
42 + .GCGCGG. 498 (95.47)
42 + .GCGGGA. 500 (91.95)
42 + .GCGCGC. 510 (95.34)
42 + .GCGCGC. 512 (95.34)
42 + .GCGCGG. 519 (95.47)
42 + .GCGGGA. 521 (91.95)
43 + .GCGCGC. 238 (95.34)
43 + [GCGCCA] 311 (89.34)
43 + [GCGGGG] 402 (87.42)
43 + [CCGCGA] 438 (87.11)
43 + [CCGCGA] 506 (87.11)
44 + [GCGCGT] 214 (88.40)
44 + [CCGCGA] 340 (87.11)
44 + [CCGCGA] 435 (87.11)
44 + [GCGGGG] 514 (87.42)
44 + [GGGCGA] 517 (87.42)
44 + [CCGCGA] 535 (87.11)
45 + .GCGGGA. 57 (91.95)
45 + .GCGCGG. 236 (95.47)
45 + [GGGCGA] 300 (87.42)
45 + [GCGGGG] 489 (87.42)
46 + [GGGCGA] 28 (87.42)
46 + [TCGCGA] 78 (85.69)
46 + [CCGCGA] 131 (87.11)
46 + [CCGCGA] 257 (87.11)
46 + [GCGCCA] 355 (89.34)
46 + [GCGGGG] 375 (87.42)
46 + [CCGCGA] 410 (87.11)
47 + .GCGGGA. 384 (91.95)
47 + .GCGCGA. 508 (100.00)
48 + .GCGCGG. 382 (95.47)
48 + .GCGCGG. 390 (95.47)
48 + .GCGCGA. 399 (100.00)
48 + [GCCCGA] 504 (87.80)
48 + [GCGCGT] 533 (88.40)
49 + [GCGCCA] 385 (89.34)
49 + .GCGCGC. 443 (95.34)
50 + [GCGCCA] 427 (89.34)
50 + [GCGCGT] 461 (88.40)
50 + [TCGCGA] 469 (85.69)
51 + [GCGCCA] 14 (89.34)
51 + .GCGCGC. 75 (95.34)
51 + .GCGCGG. 77 (95.47)
51 + .GCGCGA. 119 (100.00)
51 + [TCGCGA] 304 (85.69)
51 + .GCGCGC. 311 (95.34)
51 + [GCCCGA] 343 (87.80)
51 + [GCCCGA] 356 (87.80)
51 + .GCGCGC. 366 (95.34)
51 + .GCGCGC. 368 (95.34)
51 + .GCGCGG. 370 (95.47)
51 + .GCGGGA. 372 (91.95)
51 + [GCGGGG] 387 (87.42)
51 + [GCGGGG] 421 (87.42)
51 + .GCGCGC. 426 (95.34)
51 + .GCGCGG. 449 (95.47)
51 + [GCGGGG] 451 (87.42)
51 + .GCGCGC. 542 (95.34)
52 + .GCGCGG. 373 (95.47)
52 + [GCGGGG] 375 (87.42)
52 + .GCGCGG. 386 (95.47)
52 + .GCGCGG. 391 (95.47)
52 + .GCGCGG. 399 (95.47)
52 + .GCGCGG. 438 (95.47)
52 + [GCGGGG] 440 (87.42)
53 + [GCGGGG] 221 (87.42)
53 + [GCGGGG] 422 (87.42)
53 + .GCGCGG. 484 (95.47)
54 + [GCGCCA] 297 (89.34)
54 + .GCGGGA. 331 (91.95)
55 + .GCGCGG. 366 (95.47)
55 + .GCGCGC. 379 (95.34)
55 + .GCGCGG. 394 (95.47)
55 + .GCGCGC. 444 (95.34)
55 + [GCGGGG] 453 (87.42)
55 + [GCGGGG] 467 (87.42)
56 + [GCGGGG] 150 (87.42)
56 + [GCGCCA] 226 (89.34)
56 + [GCGCGT] 395 (88.40)
56 + [GCGCCA] 472 (89.34)
56 + [GCGGGG] 528 (87.42)
57 + [GCGGGG] 57 (87.42)
57 + [GCGGGC] 121 (87.28)
57 + .GCGCGG. 221 (95.47)
57 + [GCGGGG] 223 (87.42)
57 + [GCGGGG] 229 (87.42)
57 + [GCGGGC] 237 (87.28)
57 + .GCGCGC. 311 (95.34)
57 + .GCGCGC. 313 (95.34)
57 + [GCGCCA] 315 (89.34)
57 + .GCGCGG. 347 (95.47)
57 + .GCGCGG. 357 (95.47)
57 + .GCGCGG. 390 (95.47)
57 + [GCGGGG] 442 (87.42)
57 + .GCGCGG. 474 (95.47)
57 + [GCGGGG] 486 (87.42)
58 + [CCGCGA] 58 (87.11)
58 + .GCGCGG. 155 (95.47)
58 + [GCCCGA] 302 (87.80)
58 + [GCGGGC] 415 (87.28)
58 + [GCGGGC] 431 (87.28)
58 + [GGGCGA] 433 (87.42)
58 + .GCGCGC. 451 (95.34)
58 + .GCGCGC. 453 (95.34)
58 + .GCGCGG. 455 (95.47)
58 + [GCGGGC] 460 (87.28)
58 + [GCGGGG] 464 (87.42)
58 + [GCGGGG] 469 (87.42)
59 + [GCGGGG] 59 (87.42)
59 + [CCGCGA] 282 (87.11)
59 + [GAGCGA] 334 (86.10)
59 + .GCGGGA. 490 (91.95)
60 + [GCGGGC] 47 (87.28)
60 + .GCGGGA. 103 (91.95)
60 + .GCGCGC. 117 (95.34)
60 + [GCCCGA] 157 (87.80)
60 + .GCGGGA. 254 (91.95)
60 + .GCGCGA. 263 (100.00)
60 + [GCGGGG] 277 (87.42)
60 + .GCGCGG. 344 (95.47)
60 + [GCGGGC] 355 (87.28)
60 + [GCGGGC] 401 (87.28)
60 + .GCGCGC. 405 (95.34)
60 + .GCGCGG. 423 (95.47)
60 + .GCGCGC. 428 (95.34)
60 + .GCGCGG. 430 (95.47)
60 + [GCGGGC] 432 (87.28)
60 + [GCGGGC] 440 (87.28)
60 + .GCGGGA. 452 (91.95)
60 + .GCGCGC. 465 (95.34)
60 + [GCGGGG] 503 (87.42)
60 + .GCGGGA. 508 (91.95)
60 + [GCGCCA] 545 (89.34)
61 + .GCGGGA. 491 (91.95)
62 + [GCGGGG] 394 (87.42)
62 + .GCGCGG. 406 (95.47)
62 + [GCGGGG] 431 (87.42)
62 + .GCGCGC. 474 (95.34)
62 + .GCGCGG. 476 (95.47)
62 + .GCGCGG. 523 (95.47)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		5	14	296	10	|		0	0	180	0
2		11	295	15	4	|		0	180	0	0
3		1	17	305	2	|		0	0	180	0
4		9	269	40	7	|		0	140	40	0
5		8	23	287	7	|		0	0	180	0
6		187	62	64	12	|		54	62	64	0

---

GGCGCGAA

8 redundant motifs found:
TTGGCGCGAA - CGCGAAAC - CGCGCGAA - GGCGGGAC - GCGCGAAA - TTGGCGCG - GCGCGA - CGCGAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GGCCGGAA] 138 (87.31)
1 + [GGAGGGAA] 313 (87.80)
1 + [GGCGGGGG] 376 (88.02)
1 + [GGCGGGGC] 448 (86.28)
1 + .GGGGCGAA. 451 (91.88)
2 + [GGCGGGGC] 455 (86.28)
2 + [GGGGCGAG] 458 (87.12)
2 + [GGCGGGGC] 499 (86.28)
2 + .GGCGCGAA. 517 (100.00)
3 + .GGCGCGAG. 461 (95.24)
4 + [GGAGCGGA] 216 (88.06)
4 + [GCCGCGCA] 316 (87.22)
4 + [GGCGGGAC] 444 (89.76)
4 + [GGCGTGGA] 492 (85.40)
5 + [GGCGGGCG] 57 (86.50)
6 + .GGCGAGAA. 321 (90.62)
6 + [GGCGGGAC] 475 (89.76)
7 + [GGCGGGGC] 401 (86.28)
7 + .GGCGCGCA. 414 (95.00)
7 + .GGCGCGGG. 454 (91.76)
7 + [GGCGGGGC] 461 (86.28)
7 + [GCCGCGGA] 531 (88.74)
8 + [GGAGCGGA] 87 (88.06)
8 + .GGCGCGAG. 381 (95.24)
8 + .GGCGGGAA. 390 (96.26)
8 + .GGCGCGGC. 403 (90.02)
9 + [GCCGGGGA] 466 (85.00)
9 + .GGCGGGAG. 515 (91.50)
10 + [GGCGGGAC] 409 (89.76)
10 + [GCCGCGAG] 422 (87.46)
11 + [GGGGCGAC] 201 (85.38)
11 + .GGCGCGCG. 393 (90.24)
11 + [GGCGGGGG] 402 (88.02)
11 + [GGCGGGGC] 425 (86.28)
11 + [GCCGGGAA] 520 (88.48)
13 + [GGCGCGAT] 155 (87.82)
13 + .GGCGCCAA. 482 (90.90)
13 + .GGCGCGCG. 540 (90.24)
14 + [GGAGCGGA] 251 (88.06)
14 + [GGCGGAAA] 312 (88.25)
15 + [GGCGGGAC] 80 (89.76)
15 + [GGCGGGCG] 205 (86.50)
15 + [GGCGGGGC] 254 (86.28)
15 + .AGCGCGAA. 282 (90.10)
15 + [GGCGGGCG] 441 (86.50)
15 + [GGCGGGCG] 445 (86.50)
15 + [GGCGCGTG] 472 (85.43)
16 + [GGCGGAAA] 375 (88.25)
16 + [GGCGGGGC] 435 (86.28)
17 + [GGCCGGAA] 464 (87.31)
17 + .GGCGCGGC. 527 (90.02)
18 + .GGCGCGGA. 497 (96.53)
19 + [GGCGGAAA] 313 (88.25)
19 + [GGCGGGAC] 334 (89.76)
19 + .GGCGCCAA. 407 (90.90)
20 + [GGAGGGAA] 308 (87.80)
20 + .GGCGCGGG. 445 (91.76)
20 + [CGCGGGAA] 447 (87.64)
21 + [GGCGGGGC] 142 (86.28)
21 + .GGCGCGCA. 170 (95.00)
21 + [GGCGGGGC] 238 (86.28)
21 + [GGCGGGGG] 295 (88.02)
21 + [GGCGGGAC] 431 (89.76)
21 + .GGCGGGAG. 454 (91.50)
22 + [GCCGGGAA] 356 (88.48)
22 + [GGGGCGGA] 376 (88.41)
22 + .GGCGGGAA. 397 (96.26)
22 + .GGCGCGGG. 435 (91.76)
22 + .GGCGCGCG. 477 (90.24)
22 + [GGCGGGCG] 507 (86.50)
23 + [GGCGCACA] 51 (86.99)
23 + .GGCGGGAG. 461 (91.50)
23 + .GGCGCGAG. 496 (95.24)
24 + [GGCGGGGC] 418 (86.28)
25 + [GGGGCGAC] 389 (85.38)
26 + [GGCGGGGC] 329 (86.28)
26 + [GGCGGGGG] 366 (88.02)
26 + [GGCGCAAC] 398 (85.49)
26 + [GGCGGGAC] 409 (89.76)
26 + .GGCGGGGA. 422 (92.78)
26 + [GGCGGGGC] 439 (86.28)
27 + .GGCGCGCG. 443 (90.24)
27 + [CGCGCGGA] 445 (87.91)
27 + .GGCGCGGG. 512 (91.76)
27 + .GGCGGGAG. 518 (91.50)
28 + [GGCGGGGC] 1 (86.28)
28 + [GGCGCAGA] 64 (88.52)
28 + [GGCCCGCA] 110 (86.06)
28 + [GGCCCGAG] 150 (86.29)
28 + [AGCGCGGA] 313 (86.63)
28 + [GGCGTGGA] 492 (85.40)
29 + .GGCCCGAA. 57 (91.06)
29 + .GGCGCGCA. 251 (95.00)
29 + [GGCGGGGC] 355 (86.28)
29 + [GGGGCGAG] 358 (87.12)
29 + [GGCGGGAC] 372 (89.76)
29 + [GGCGGGGC] 422 (86.28)
29 + [CGCGCGCA] 457 (86.39)
29 + .GGCGCGGC. 508 (90.02)
29 + .GGCGCGGA. 538 (96.53)
30 + .GGCGCGCG. 77 (90.24)
31 + [CGCGCGCA] 498 (86.39)
32 + [GGCGGGGC] 287 (86.28)
32 + [GGGGCGCA] 290 (86.88)
33 + .GGCGCGAC. 98 (93.50)
33 + [GGCGGGAC] 276 (89.76)
33 + [GCCGCGCA] 422 (87.22)
34 + [CGCGGGAA] 370 (87.64)
34 + .GGCGGGAA. 501 (96.26)
35 + .GGCGCAAA. 307 (91.99)
35 + .GGCGCGAA. 350 (100.00)
35 + .GGCGCGAA. 412 (100.00)
35 + [GGCGGGGC] 472 (86.28)
35 + [GGGGCGGA] 475 (88.41)
35 + .GGCGCGCG. 492 (90.24)
35 + [CGCGCGCA] 494 (86.39)
36 + [CGCGGGAA] 463 (87.64)
37 + [GCCGCGAG] 54 (87.46)
37 + .GGCGCGGG. 93 (91.76)
37 + [CGCGCGGA] 103 (87.91)
37 + .GGCGCGCG. 141 (90.24)
37 + [GGAGCGAG] 301 (86.78)
37 + .GGCGCAAA. 354 (91.99)
37 + [GGCGGGGC] 387 (86.28)
37 + [GGCGGGGC] 392 (86.28)
37 + [GGGGCGGA] 395 (88.41)
37 + .GGCGCGCA. 415 (95.00)
37 + .GGCGGGAA. 441 (96.26)
38 + [GGCGGGGC] 201 (86.28)
38 + [GGCGGGGC] 206 (86.28)
38 + .GGCGGGGA. 262 (92.78)
38 + .GGCGCGTA. 486 (90.19)
38 + [GGGGCGGA] 528 (88.41)
39 + [GGAGGGAA] 56 (87.80)
39 + [GGCGTGGA] 317 (85.40)
39 + [AGCGCGGA] 328 (86.63)
39 + [AGCGCGGA] 364 (86.63)
40 + .GGCGCCAA. 175 (90.90)
40 + [GGCGGGGG] 445 (88.02)
40 + [GGGGCGGA] 449 (88.41)
40 + [GGCGGGGC] 457 (86.28)
40 + .GGCGGGAG. 474 (91.50)
40 + .GGCGCGCG. 513 (90.24)
40 + [CGCGGGAA] 519 (87.64)
41 + [GGAGGGAA] 363 (87.80)
42 + [GGCGGGGC] 393 (86.28)
42 + [GGCGGGAC] 425 (89.76)
42 + [GGCGGGGC] 450 (86.28)
42 + [GGCGGGGC] 483 (86.28)
42 + .GGCGCGCG. 495 (90.24)
42 + [CGCGGGAA] 499 (87.64)
42 + .GGCGCGCG. 509 (90.24)
43 + [GGCGGGGC] 401 (86.28)
43 + [GCCGCGAG] 437 (87.46)
43 + [GGAGCGCA] 462 (86.54)
44 + .GGCGCGTA. 213 (90.19)
44 + [GCCGCGAC] 339 (85.72)
44 + [GGCGGGGC] 513 (86.28)
44 + [GGGGCGAG] 516 (87.12)
44 + .GCCGCGAA. 534 (92.22)
45 + [AGCGGGAA] 56 (86.36)
46 + [GGGGCGAG] 27 (87.12)
46 + [GCCGCGAG] 130 (87.46)
46 + .GGCGCCAA. 354 (90.90)
46 + [GGCGGGGC] 374 (86.28)
47 + [GGCGGGAC] 383 (89.76)
47 + .CGCGCGAA. 507 (91.39)
48 + .GGCGCGAA. 398 (100.00)
48 + [GGCGCCGA] 465 (87.43)
49 + .GGCGCCAA. 384 (90.90)
49 + [GGGGCGGA] 485 (88.41)
50 + [GGAGCGGA] 348 (88.06)
50 + [GGAGGGAA] 353 (87.80)
50 + [GGCGCCAG] 426 (86.14)
51 + .GGCGCGAC. 118 (93.50)
51 + .GGCGCGCA. 310 (95.00)
51 + .GGCGCGCG. 365 (90.24)
51 + [GGCGGGGC] 386 (86.28)
51 + [GGCGCCCA] 396 (85.90)
51 + [GGCGGGGC] 420 (86.28)
51 + .GGCGCGCA. 425 (95.00)
51 + .GGCGCGGG. 448 (91.76)
52 + [GGCGGGTA] 403 (86.44)
52 + .GGCGCGGG. 437 (91.76)
53 + [GGCGGGGC] 421 (86.28)
54 + .GGCGCCAA. 296 (90.90)
54 + .GGCGGGAA. 330 (96.26)
54 + [GGCGGGTA] 492 (86.44)
55 + .GGCGCGGA. 365 (96.53)
55 + [AGCGCGGA] 393 (86.63)
55 + .GGCGGGGA. 466 (92.78)
56 + [GCCGGGAA] 275 (88.48)
56 + [GGCGCACA] 358 (86.99)
56 + [GGCGCCAG] 471 (86.14)
56 + .GGCGGGGA. 527 (92.78)
57 + .GGCGGGCA. 120 (91.26)
57 + [GCCGCGCA] 186 (87.22)
57 + .GGCGCGGG. 220 (91.76)
57 + [GGCGGGGC] 228 (86.28)
57 + [GGCGGGCG] 236 (86.50)
57 + .GGCGCGGG. 356 (91.76)
57 + [GGCCCGGA] 433 (87.58)
57 + [GGCGGGGC] 485 (86.28)
57 + [GGCCCGCA] 490 (86.06)
58 + [GGCGCAGA] 382 (88.52)
58 + [GGCGGGCG] 459 (86.50)
58 + [GGCGGGGC] 463 (86.28)
58 + [GGCGGGGC] 468 (86.28)
59 + [GGCGGGGG] 58 (88.02)
59 + [GCCGCGCA] 295 (87.22)
59 + [GGGGCGGA] 466 (88.41)
59 + .GGCGGGAA. 489 (96.26)
60 + [GGCGGGAC] 102 (89.76)
60 + [GGCGCGCC] 116 (88.50)
60 + .GGCGGGAG. 253 (91.50)
60 + .GGCGGGGA. 276 (92.78)
60 + [GCCGCGGA] 289 (88.74)
60 + [GGCGGGCG] 400 (86.50)
60 + .GGCGCGCA. 404 (95.00)
60 + .GGCGCGGC. 422 (90.02)
60 + .GGCGCGCG. 427 (90.24)
60 + .GGCGGGAG. 451 (91.50)
60 + [GGCGGGAC] 507 (89.76)
61 + [GGGGCGGA] 418 (88.41)
61 + [AGCGGGAA] 490 (86.36)
62 + .GGCGGGGA. 393 (92.78)
62 + [AGCGCGGA] 405 (86.63)
62 + .GGCGGGGA. 430 (92.78)
62 + [AGCGCGGA] 522 (86.63)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		14	20	218	6	|		1	1	79	0
2		3	26	225	4	|		0	1	80	0
3		20	209	22	7	|		0	80	1	0
4		8	19	227	4	|		0	1	80	0
5		13	175	62	8	|		1	59	21	0
6		23	17	212	6	|		2	6	73	0
7		152	38	58	10	|		36	20	23	2
8		176	29	47	6	|		44	6	31	0

---

CGTTTCGCGC

2 redundant motifs found:
CGTTTGGCGC - TTTCGCGC -

Best occurrences (match percentage):
Seq St oligo pos match
2 + .CGCTCCGCGC. 59 (93.37)
2 + [CGCTCCCCGC] 369 (88.49)
4 + [CGCTTAGCGC] 383 (86.01)
6 + [CCTTTCCCGC] 252 (87.25)
7 + [CGCCTCCCGC] 325 (88.83)
8 + [CGCCCCGCGC] 229 (89.99)
8 + [CGCCCCCCGC] 427 (85.11)
8 + [CGCTCCGCCC] 485 (86.41)
8 + [CGCCCCGCGC] 495 (89.99)
9 + .CGTTTCCCGC. 504 (95.12)
10 + [CGGCTCGCCC] 213 (85.25)
11 + [CGCTCCGGGC] 442 (85.63)
13 + [CGTTGCACGC] 358 (86.47)
13 + [CGCCCCCCGC] 431 (85.11)
13 + .CGCTTGGCGC. 477 (90.05)
15 + [CGTCTCGTGC] 219 (86.46)
16 + .CGTTTCGCGC. 456 (100.00)
16 + [CGCCTGGCGC] 517 (86.67)
17 + .CCTTTCGCGC. 511 (92.12)
20 + .CGTGTCCCGC. 352 (90.24)
21 + [CGCGGCGCGC] 167 (87.51)
26 + [CGCCCCCCGC] 67 (85.11)
26 + [CGCGCCGCGC] 188 (88.48)
27 + .CGGTTCCCGC. 468 (90.70)
28 + [CTTTTCCCGC] 100 (88.66)
28 + .CGGTCCGCGC. 228 (91.87)
29 + [CGCCGCGCGC] 171 (89.02)
29 + [CTTCTCCCGC] 185 (85.29)
29 + [CGCGTCCCGC] 192 (87.32)
29 + [CGTCCCGCCC] 194 (85.95)
29 + [CGCGTCCCGC] 216 (87.32)
29 + .CGTCCCGCGC. 218 (92.91)
29 + [CGCCCCGCGC] 225 (89.99)
29 + [CGCCCCGCGC] 232 (89.99)
29 + [GGTCCCGCGC] 388 (87.20)
29 + .GGTTCCGCGC. 452 (90.57)
31 + [CGCGCCGCGC] 491 (88.48)
31 + [CGCCGCGCGC] 493 (89.02)
35 + [GGTTTGGCGC] 407 (87.25)
35 + [CGGCGCGCGC] 491 (87.52)
36 + [CGTGCCCCGC] 409 (86.52)
38 + [CGCCCCGCGC] 335 (89.99)
40 + [CGTCTCGCGG] 404 (87.76)
40 + [CGGCGCGCGC] 512 (87.52)
42 + [CGGCGCGCGC] 508 (87.52)
43 + .AGTTTCGCGC. 305 (92.26)
46 + .CGTTTGGCGC. 349 (92.96)
47 + [CGCCTCGGGC] 367 (85.97)
47 + .CTTTTCGCGC. 502 (93.54)
48 + [CGGTTGGCGC] 393 (88.55)
49 + [CGGGTCCCGC] 429 (85.82)
49 + [CGCGCCGCGC] 444 (88.48)
51 + .CGCGTCGCGC. 69 (92.20)
51 + .CGTCGCGCGC. 71 (91.93)
51 + [CGGCGCGCGC] 364 (87.52)
51 + [CGGGGCGCGC] 422 (86.01)
51 + .CGCTGCGCGC. 538 (92.39)
54 + [AGTTTGGCGC] 291 (85.22)
57 + .CGCTGCGCGC. 307 (92.39)
58 + [CTGTCCGCGC] 476 (85.41)
60 + [CGCGGCGCGC] 424 (87.51)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		14	128	25	11	|		1	15	1	0
2		10	14	133	21	|		0	1	15	1
3		8	43	28	99	|		0	5	2	10
4		7	40	26	105	|		0	2	2	13
5		6	37	28	107	|		0	4	3	10
6		6	142	19	11	|		0	15	2	0
7		10	31	125	12	|		0	3	14	0
8		8	146	16	8	|		0	17	0	0
9		3	20	146	9	|		0	0	17	0
10		6	151	12	9	|		0	17	0	0

---

TCGCGC

6 redundant motifs found:
TTTCGCGC - TTCGCGCG - GCGCGT - CGCGCG - TTCGCG - CGCGCA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TCGCCC] 162 (88.87)
1 + .TCCCGC. 325 (91.96)
1 + .CCGCGC. 486 (94.72)
2 + .CCGCGC. 16 (94.72)
2 + .CCGCGC. 63 (94.72)
2 + .GCGCGC. 65 (95.29)
2 + [CCCCGC] 373 (86.68)
2 + .TGGCGC. 516 (90.40)
3 + .TGGCGC. 312 (90.40)
4 + [GCCCGC] 166 (87.26)
4 + [TCGCGG] 183 (88.25)
4 + [GGGCGC] 190 (85.69)
4 + .CCGCGC. 209 (94.72)
4 + .GCGCGC. 244 (95.29)
4 + .GCGCGC. 246 (95.29)
4 + [GCCCGC] 291 (87.26)
4 + .CCGCGC. 317 (94.72)
4 + [TCGCGG] 397 (88.25)
5 + [GGGCGC] 60 (85.69)
5 + .CCGCGC. 343 (94.72)
5 + [TCGAGC] 475 (85.42)
5 + [TCGAGC] 482 (85.42)
5 + [CGGCGC] 522 (85.12)
6 + .TCCCGC. 256 (91.96)
6 + .TCCCGC. 277 (91.96)
7 + [CCCCGC] 7 (86.68)
7 + .TCCCGC. 42 (91.96)
7 + [CGGCGC] 108 (85.12)
7 + .CCGCGC. 113 (94.72)
7 + [CGGCGC] 122 (85.12)
7 + [TCTCGC] 169 (89.61)
7 + [TCGAGC] 254 (85.42)
7 + .TCCCGC. 329 (91.96)
7 + [CCCCGC] 349 (86.68)
7 + .TGGCGC. 413 (90.40)
7 + .GCGCGC. 415 (95.29)
7 + .CCGCGC. 434 (94.72)
7 + [GGGCGC] 453 (85.69)
7 + [GCCCGC] 477 (87.26)
7 + [GCCCGC] 509 (87.26)
8 + [GGGCGC] 190 (85.69)
8 + [CGGCGC] 221 (85.12)
8 + [CCCCGC] 231 (86.68)
8 + .CCGCGC. 233 (94.72)
8 + [CCCCGC] 283 (86.68)
8 + [CCCCGC] 374 (86.68)
8 + [GGGCGC] 380 (85.69)
8 + [CCCCGC] 424 (86.68)
8 + [CCCCGC] 431 (86.68)
8 + [GGGCGC] 439 (85.69)
8 + [CCCCGC] 466 (86.68)
8 + [CCCCGC] 482 (86.68)
8 + [CCCCGC] 492 (86.68)
8 + [CCCCGC] 497 (86.68)
8 + .CCGCGC. 499 (94.72)
8 + .CCGCGC. 512 (94.72)
9 + [ACGCGC] 165 (87.70)
9 + [CCCCGC] 363 (86.68)
9 + .TCCCGC. 508 (91.96)
10 + .TCCCGC. 7 (91.96)
10 + .CCGCGC. 123 (94.72)
10 + [ACGCGC] 168 (87.70)
10 + [TCGCCC] 217 (88.87)
10 + [TCGCCC] 258 (88.87)
10 + [CCCCGC] 274 (86.68)
10 + [CCCCGC] 289 (86.68)
10 + [CGGCGC] 358 (85.12)
10 + [CGGCGC] 459 (85.12)
11 + [CGGCGC] 364 (85.12)
11 + [GCCCGC] 374 (87.26)
11 + [CGGCGC] 392 (85.12)
11 + .GCGCGC. 394 (95.29)
11 + [GGGCGC] 439 (85.69)
11 + [CCCCGC] 458 (86.68)
11 + [TCGAGC] 490 (85.42)
11 + [TCTCGC] 508 (89.61)
11 + [TCGCCC] 510 (88.87)
13 + [TCTCGC] 123 (89.61)
13 + [TCGCCC] 133 (88.87)
13 + .TGGCGC. 154 (90.40)
13 + .CCGCGC. 250 (94.72)
13 + .TCCCGC. 403 (91.96)
13 + [CCCCGC] 435 (86.68)
13 + [CCCCGC] 454 (86.68)
13 + .TGGCGC. 481 (90.40)
13 + .TGGCGC. 539 (90.40)
13 + .GCGCGC. 541 (95.29)
14 + [CCCCGC] 296 (86.68)
14 + [TCTCGC] 354 (89.61)
14 + [TCGCCC] 356 (88.87)
14 + [CCCCGC] 365 (86.68)
14 + .TCCCGC. 409 (91.96)
15 + [GGGCGC] 208 (85.69)
15 + [CGGCGC] 348 (85.12)
15 + [TCGCCC] 368 (88.87)
15 + [CCCCGC] 377 (86.68)
15 + [GGGCGC] 448 (85.69)
15 + [CGGCGC] 471 (85.12)
15 + [TCGCGA] 512 (86.04)
16 + .TCGCGC. 460 (100.00)
16 + [GGGCGC] 514 (85.69)
16 + .TGGCGC. 521 (90.40)
17 + [ACGCGC] 75 (87.70)
17 + .CCGCGC. 117 (94.72)
17 + .CCGCGC. 256 (94.72)
17 + [TCGCGA] 284 (86.04)
17 + .TCGCGC. 515 (100.00)
17 + [CGGCGC] 526 (85.12)
18 + [TCGCCC] 24 (88.87)
18 + [GGGCGC] 496 (85.69)
18 + .GCGCGC. 510 (95.29)
19 + [CCCCGC] 393 (86.68)
19 + .TGGCGC. 406 (90.40)
19 + [TCTCGC] 429 (89.61)
19 + [TCGCCC] 431 (88.87)
19 + [TCGCGA] 453 (86.04)
19 + .GCGCGC. 462 (95.29)
19 + .CCGCGC. 487 (94.72)
20 + [CGGCGC] 325 (85.12)
20 + .TCCCGC. 356 (91.96)
20 + [GGGCGC] 444 (85.69)
21 + [CGGCGC] 169 (85.12)
21 + .GCGCGC. 171 (95.29)
21 + [CCCCGC] 180 (86.68)
21 + .GCGCGC. 219 (95.29)
21 + .GCGCGC. 221 (95.29)
21 + [TCGCGA] 272 (86.04)
22 + [CCCCGC] 59 (86.68)
22 + [TCGCGG] 151 (88.25)
22 + [CGGCGC] 191 (85.12)
22 + .CCGCGC. 228 (94.72)
22 + [CCCCGC] 323 (86.68)
22 + [GGGCGC] 434 (85.69)
22 + [GGGCGC] 476 (85.69)
22 + .GCGCGC. 478 (95.29)
22 + .GCGCGC. 480 (95.29)
23 + .TGGCGC. 50 (90.40)
23 + [GCCCGC] 236 (87.26)
23 + [TCGCCC] 253 (88.87)
23 + .TCGCGC. 267 (100.00)
23 + .TGGCGC. 495 (90.40)
24 + .TCCCGC. 70 (91.96)
24 + .GCGCGC. 226 (95.29)
24 + .GCGCGC. 228 (95.29)
24 + [TCTCGC] 240 (89.61)
24 + [TCGCCC] 285 (88.87)
24 + [CCCCGC] 288 (86.68)
24 + [GGGCGC] 450 (85.69)
25 + .TCGCGC. 12 (100.00)
25 + [TCTCGC] 374 (89.61)
25 + .TCGCGC. 458 (100.00)
26 + [GCCCGC] 12 (87.26)
26 + [TCGCGA] 32 (86.04)
26 + [ACGCGC] 50 (87.70)
26 + .GCGCGC. 52 (95.29)
26 + [CGGCGC] 64 (85.12)
26 + [CCCCGC] 71 (86.68)
26 + [CCCCGC] 83 (86.68)
26 + [CCCCGC] 115 (86.68)
26 + [CCCCGC] 121 (86.68)
26 + [CCCCGC] 129 (86.68)
26 + [GCCCGC] 185 (87.26)
26 + .CCGCGC. 187 (94.72)
26 + .CCGCGC. 192 (94.72)
26 + .TCCCGC. 276 (91.96)
26 + [GGGCGC] 397 (85.69)
27 + [TCGCGG] 324 (88.25)
27 + [TCTCGC] 372 (89.61)
27 + [TCGCGA] 374 (86.04)
27 + [CGGCGC] 389 (85.12)
27 + [TCGCCC] 433 (88.87)
27 + .TGGCGC. 442 (90.40)
27 + .GCGCGC. 444 (95.29)
27 + .TCCCGC. 472 (91.96)
27 + [CGGCGC] 511 (85.12)
28 + [GGGCGC] 63 (85.69)
28 + .CCGCGC. 91 (94.72)
28 + .TCCCGC. 104 (91.96)
28 + [GCCCGC] 111 (87.26)
28 + .TCCCGC. 168 (91.96)
28 + [GCCCGC] 175 (87.26)
28 + [GCCCGC] 179 (87.26)
28 + [GCCCGC] 202 (87.26)
28 + [GCCCGC] 206 (87.26)
28 + .CCGCGC. 232 (94.72)
28 + [GCCCGC] 254 (87.26)
28 + [TCGCGA] 263 (86.04)
28 + .GCGCGC. 275 (95.29)
28 + [GGGCGC] 307 (85.69)
28 + .CCGCGC. 423 (94.72)
28 + .GCGCGC. 425 (95.29)
28 + .GCGCGC. 427 (95.29)
28 + [GCCCGC] 478 (87.26)
28 + [TCGCGG] 487 (88.25)
28 + [ACGCGC] 508 (87.70)
29 + .CCGCGC. 66 (94.72)
29 + [GCCCGC] 73 (87.26)
29 + .CCGCGC. 95 (94.72)
29 + [CCCCGC] 138 (86.68)
29 + [CGGCGC] 147 (85.12)
29 + [GCCCGC] 151 (87.26)
29 + [GCCCGC] 158 (87.26)
29 + .CCGCGC. 173 (94.72)
29 + .GCGCGC. 175 (95.29)
29 + .TCCCGC. 189 (91.96)
29 + .TCCCGC. 196 (91.96)
29 + [GCCCGC] 200 (87.26)
29 + [CCCCGC] 208 (86.68)
29 + [CCCCGC] 213 (86.68)
29 + .TCCCGC. 220 (91.96)
29 + .CCGCGC. 222 (94.72)
29 + [CCCCGC] 227 (86.68)
29 + .CCGCGC. 229 (94.72)
29 + [CCCCGC] 234 (86.68)
29 + .CCGCGC. 236 (94.72)
29 + [CGGCGC] 250 (85.12)
29 + .GCGCGC. 252 (95.29)
29 + [CCCCGC] 274 (86.68)
29 + [CCCCGC] 292 (86.68)
29 + [TCGCGG] 321 (88.25)
29 + [CGGCGC] 329 (85.12)
29 + .TCCCGC. 390 (91.96)
29 + .CCGCGC. 392 (94.72)
29 + .CCGCGC. 456 (94.72)
29 + .GCGCGC. 458 (95.29)
29 + .TCCCGC. 478 (91.96)
29 + [GGGCGC] 492 (85.69)
29 + [CGGCGC] 507 (85.12)
30 + .TGGCGC. 76 (90.40)
30 + .GCGCGC. 78 (95.29)
30 + .GCGCGC. 80 (95.29)
31 + .TCCCGC. 244 (91.96)
31 + [GCCCGC] 385 (87.26)
31 + [GCCCGC] 455 (87.26)
31 + [TCGCCC] 464 (88.87)
31 + .TCGCGC. 490 (100.00)
31 + .CCGCGC. 495 (94.72)
31 + .GCGCGC. 497 (95.29)
31 + .GCGCGC. 499 (95.29)
32 + [GGGCGC] 291 (85.69)
32 + [TCGCCC] 369 (88.87)
32 + [CCCCGC] 381 (86.68)
32 + .GCGCGC. 438 (95.29)
32 + [GGGCGC] 462 (85.69)
32 + .TCGCGC. 475 (100.00)
33 + [GGGCGC] 97 (85.69)
33 + .CCGCGC. 423 (94.72)
34 + .CCGCGC. 321 (94.72)
34 + .TCGCGC. 529 (100.00)
35 + .TGGCGC. 349 (90.40)
35 + .TGGCGC. 411 (90.40)
35 + [CGGCGC] 491 (85.12)
35 + .GCGCGC. 493 (95.29)
35 + .GCGCGC. 495 (95.29)
35 + [TCGAGC] 538 (85.42)
35 + .TGGCGC. 545 (90.40)
36 + [CGGCGC] 9 (85.12)
36 + [CCCCGC] 20 (86.68)
36 + .CCGCGC. 22 (94.72)
36 + .GCGCGC. 24 (95.29)
36 + [CCCCGC] 76 (86.68)
36 + [CCCCGC] 89 (86.68)
36 + .CCGCGC. 91 (94.72)
36 + .GCGCGC. 93 (95.29)
36 + .TCCCGC. 124 (91.96)
36 + [CCCCGC] 145 (86.68)
36 + [TCTCGC] 171 (89.61)
36 + [TCGCGG] 173 (88.25)
36 + .CCGCGC. 194 (94.72)
36 + .GCGCGC. 196 (95.29)
36 + [CCCCGC] 231 (86.68)
36 + [TCTCGC] 254 (89.61)
36 + [TCGCGG] 256 (88.25)
36 + .TCCCGC. 326 (91.96)
36 + [TCTCGC] 352 (89.61)
36 + [TCGCGG] 354 (88.25)
36 + [CCCCGC] 360 (86.68)
36 + [CCCCGC] 413 (86.68)
36 + [CCCCGC] 423 (86.68)
36 + .CCGCGC. 425 (94.72)
36 + .GCGCGC. 427 (95.29)
36 + [CCCCGC] 432 (86.68)
36 + [GCCCGC] 448 (87.26)
36 + .TCCCGC. 535 (91.96)
37 + [CGGCGC] 92 (85.12)
37 + [ACGCGC] 102 (87.70)
37 + [CCCCGC] 124 (86.68)
37 + [CCCCGC] 129 (86.68)
37 + .GCGCGC. 142 (95.29)
37 + [ACGCGC] 314 (87.70)
37 + .TGGCGC. 353 (90.40)
37 + .GCGCGC. 416 (95.29)
37 + .TCCCGC. 487 (91.96)
37 + .TGGCGC. 514 (90.40)
38 + .CCGCGC. 276 (94.72)
38 + .GCGCGC. 305 (95.29)
38 + .GCGCGC. 307 (95.29)
38 + [CCCCGC] 312 (86.68)
38 + [CCCCGC] 317 (86.68)
38 + [CCCCGC] 337 (86.68)
38 + .CCGCGC. 339 (94.72)
38 + .TCCCGC. 355 (91.96)
38 + [CGGCGC] 377 (85.12)
38 + [CGGCGC] 443 (85.12)
38 + [TCGCGG] 468 (88.25)
38 + .TGGCGC. 485 (90.40)
38 + [TCGAGC] 542 (85.42)
39 + [GCCCGC] 358 (87.26)
40 + [TCTCGC] 406 (89.61)
40 + [TCGCGG] 408 (88.25)
40 + [CGGCGC] 512 (85.12)
40 + .GCGCGC. 514 (95.29)
40 + .GCGCGC. 516 (95.29)
42 + .TCCCGC. 468 (91.96)
42 + [CGGCGC] 494 (85.12)
42 + .GCGCGC. 496 (95.29)
42 + [CGGCGC] 508 (85.12)
42 + .GCGCGC. 510 (95.29)
42 + .GCGCGC. 512 (95.29)
43 + [CCCCGC] 63 (86.68)
43 + .CCGCGC. 236 (94.72)
43 + .GCGCGC. 238 (95.29)
43 + [GCCCGC] 242 (87.26)
43 + .TCGCGC. 309 (100.00)
43 + .TCCCGC. 504 (91.96)
44 + [TCGCCC] 254 (88.87)
44 + [GGGCGC] 335 (85.69)
44 + [CCCCGC] 376 (86.68)
44 + [CCCCGC] 382 (86.68)
44 + [CCCCGC] 412 (86.68)
44 + [GCCCGC] 423 (87.26)
44 + .CCGCGC. 425 (94.72)
44 + .TCCCGC. 433 (91.96)
45 + [TCTCGC] 217 (89.61)
45 + [TCGCGG] 219 (88.25)
45 + [CGGCGC] 239 (85.12)
45 + [GGGCGC] 270 (85.69)
45 + [ACGCGC] 335 (87.70)
45 + [CCCCGC] 418 (86.68)
45 + [TCTCGC] 464 (89.61)
45 + [TCGCGG] 466 (88.25)
45 + [TCTCGC] 485 (89.61)
45 + [TCGCGG] 487 (88.25)
46 + [GGGCGC] 14 (85.69)
46 + [TCGCGA] 78 (86.04)
46 + [CCCCGC] 199 (86.68)
46 + .TCCCGC. 255 (91.96)
46 + .TGGCGC. 353 (90.40)
46 + [TCTCGC] 543 (89.61)
46 + [TCGCCC] 545 (88.87)
47 + .CCGCGC. 185 (94.72)
47 + [ACGCGC] 323 (87.70)
47 + [GCCCGC] 402 (87.26)
47 + .TCGCGC. 506 (100.00)
48 + [CGGCGC] 205 (85.12)
48 + [GCCCGC] 236 (87.26)
48 + .CCGCGC. 388 (94.72)
48 + .TGGCGC. 397 (90.40)
48 + [CGGCGC] 464 (85.12)
48 + .TGGCGC. 500 (90.40)
49 + [GCCCGC] 347 (87.26)
49 + [TCGCCC] 353 (88.87)
49 + .TGGCGC. 383 (90.40)
49 + .TCCCGC. 433 (91.96)
49 + .CCGCGC. 441 (94.72)
49 + .GCGCGC. 443 (95.29)
49 + .CCGCGC. 448 (94.72)
49 + [GCCCGC] 506 (87.26)
49 + [TCTCGC] 539 (89.61)
50 + .TCCCGC. 336 (91.96)
50 + [CCCCGC] 394 (86.68)
50 + [GGGCGC] 425 (85.69)
50 + [GGGCGC] 459 (85.69)
50 + [TCTCGC] 467 (89.61)
50 + [TCGCGA] 469 (86.04)
51 + .TCGCGC. 73 (100.00)
51 + .GCGCGC. 75 (95.29)
51 + .TCCCGC. 90 (91.96)
51 + [CCCCGC] 105 (86.68)
51 + [GCCCGC] 109 (87.26)
51 + [GCCCGC] 143 (87.26)
51 + .TCCCGC. 168 (91.96)
51 + [TCGCGG] 258 (88.25)
51 + [GCCCGC] 266 (87.26)
51 + [TCGCCC] 284 (88.87)
51 + [TCGCGA] 304 (86.04)
51 + .GCGCGC. 311 (95.29)
51 + [TCTCGC] 352 (89.61)
51 + [TCGCCC] 354 (88.87)
51 + [CGGCGC] 364 (85.12)
51 + .GCGCGC. 366 (95.29)
51 + .GCGCGC. 368 (95.29)
51 + [CGGCGC] 395 (85.12)
51 + [GGGCGC] 424 (85.69)
51 + .GCGCGC. 426 (95.29)
51 + [CGGCGC] 447 (85.12)
51 + [GCCCGC] 505 (87.26)
51 + .CCGCGC. 507 (94.72)
51 + .GCGCGC. 542 (95.29)
52 + [ACGCGC] 371 (87.70)
52 + .TCGCGC. 384 (100.00)
52 + [CGGCGC] 389 (85.12)
52 + .TCGCGC. 397 (100.00)
52 + [CGGCGC] 436 (85.12)
53 + [CGGCGC] 468 (85.12)
53 + .TCCCGC. 518 (91.96)
53 + .CCGCGC. 520 (94.72)
54 + [TCGAGC] 62 (85.42)
54 + [TCTCGC] 79 (89.61)
54 + [CCCCGC] 220 (86.68)
54 + [CCCCGC] 237 (86.68)
54 + [CCCCGC] 252 (86.68)
54 + .TGGCGC. 295 (90.40)
54 + [GGGCGC] 346 (85.69)
54 + .TCCCGC. 396 (91.96)
55 + .GCGCGC. 379 (95.29)
55 + .CCGCGC. 442 (94.72)
55 + .GCGCGC. 444 (95.29)
56 + [TCGAGC] 246 (85.42)
56 + .TGGCGC. 357 (90.40)
56 + [GGGCGC] 402 (85.69)
56 + .TGGCGC. 470 (90.40)
56 + [GGGCGC] 520 (85.69)
57 + [GCCCGC] 90 (87.26)
57 + [CCCCGC] 172 (86.68)
57 + [GCCCGC] 176 (87.26)
57 + .CCGCGC. 187 (94.72)
57 + [TCGCGG] 216 (88.25)
57 + [CGGCGC] 219 (85.12)
57 + [GCCCGC] 284 (87.26)
57 + [CCCCGC] 304 (86.68)
57 + .GCGCGC. 311 (95.29)
57 + .GCGCGC. 313 (95.29)
57 + .CCGCGC. 329 (94.72)
57 + [GGGCGC] 355 (85.69)
57 + .CCGCGC. 388 (94.72)
57 + [GCCCGC] 491 (87.26)
58 + [CCCCGC] 95 (86.68)
58 + [TCGAGC] 298 (85.42)
58 + .GCGCGC. 451 (95.29)
58 + .GCGCGC. 453 (95.29)
58 + .CCGCGC. 480 (94.72)
58 + [GGGCGC] 497 (85.69)
59 + [GCCCGC] 24 (87.26)
59 + .TCCCGC. 280 (91.96)
59 + .CCGCGC. 296 (94.72)
59 + [GGGCGC] 362 (85.69)
59 + .TGGCGC. 406 (90.40)
59 + [CCCCGC] 458 (86.68)
59 + [TCTCGC] 504 (89.61)
59 + [TCGCGG] 506 (88.25)
60 + [CCCCGC] 61 (86.68)
60 + [GGGCGC] 115 (85.69)
60 + .GCGCGC. 117 (95.29)
60 + [TCGCCC] 155 (88.87)
60 + .CCGCGC. 332 (94.72)
60 + [GGGCGC] 403 (85.69)
60 + .GCGCGC. 405 (95.29)
60 + [GGGCGC] 421 (85.69)
60 + [CGGCGC] 426 (85.12)
60 + .GCGCGC. 428 (95.29)
60 + .GCGCGC. 465 (95.29)
60 + .TGGCGC. 537 (90.40)
60 + [CGGCGC] 543 (85.12)
62 + .TGGCGC. 372 (90.40)
62 + .GCGCGC. 474 (95.29)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		10	54	62	192	|		0	54	62	78
2		5	281	28	4	|		0	166	28	0
3		5	37	255	21	|		0	37	157	0
4		9	299	6	4	|		0	194	0	0
5		2	20	290	6	|		0	0	194	0
6		10	286	17	5	|		0	194	0	0

---

GCGCGAAA

7 redundant motifs found:
TCGCGCGAAA - GCGCGGTA - CGCGAAAC - CGCGCGAA - GGCGCGAA - GCGCGA - CGCGAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GAGGGAAA] 314 (85.67)
1 + [GGGCGAAG] 452 (86.26)
2 + [GCCGGAAA] 340 (86.45)
2 + .GCGCGAAG. 518 (94.81)
4 + [GCGCGGGA] 211 (89.10)
4 + [GCGGGGAG] 399 (85.46)
6 + [GCGAGAAG] 322 (85.29)
7 + [GCGCGCAG] 415 (87.55)
8 + [GCGCGAGC] 382 (86.74)
8 + [GCGGGAAC] 391 (88.29)
8 + [GCGCGGCA] 404 (88.93)
10 + [GCGGGACA] 410 (87.73)
14 + [GAGCGGAA] 252 (86.87)
14 + [GGGCGGAA] 311 (87.38)
14 + [GCGAGAAG] 413 (85.29)
15 + .GCGCGAAC. 283 (93.57)
16 + [GCGGAAAA] 376 (85.49)
17 + [GCGCGGCA] 528 (88.93)
18 + .GCGCGGAG. 498 (90.74)
19 + [GGGCGGAA] 312 (87.38)
19 + [GGGCGGAA] 351 (87.38)
19 + .GCGCCAAA. 408 (92.39)
19 + [GCGAGAAG] 455 (85.29)
20 + [GCGCGGGA] 446 (89.10)
20 + .GCGGGAAA. 448 (94.73)
21 + [GCGCGCAC] 171 (86.30)
22 + [GCGGGAAG] 398 (89.54)
22 + [GCGCGGGA] 436 (89.10)
22 + [GCGGGACA] 438 (87.73)
22 + [GGGCGGAA] 510 (87.38)
23 + [GCGCGGCA] 189 (88.93)
23 + [GCGCGAGC] 497 (86.74)
27 + [GCGCGGAC] 446 (89.49)
27 + [GGGCGAAG] 525 (86.26)
28 + .GCGCGGAG. 314 (90.74)
29 + [GCCCGAAC] 58 (85.30)
29 + [GCGCGCCA] 175 (85.74)
29 + [GCGCCAGA] 177 (85.56)
29 + [GCGCGCAG] 252 (87.55)
29 + [GCGCGCAG] 458 (87.55)
29 + [GCGCGGAT] 539 (85.52)
31 + [GCGCGCAC] 499 (86.30)
31 + [GCCGGAAA] 537 (86.45)
33 + [GCGCGACG] 99 (87.82)
33 + [GCGGGACA] 277 (87.73)
33 + [GCGCAGAA] 425 (86.69)
33 + [GCGCAAAG] 449 (85.58)
34 + [GCCGGAAA] 201 (86.45)
34 + [GCGCGACC] 323 (86.57)
34 + [GCGCGGGA] 369 (89.10)
34 + [GCGGGAAG] 371 (89.54)
34 + .GCGGGAAA. 502 (94.73)
35 + [GCGCAAAG] 308 (85.58)
35 + .GCGCGAAA. 351 (100.00)
35 + .GCGCGAAA. 413 (100.00)
35 + [GGGCGGAA] 476 (87.38)
35 + .GCGCGCAA. 495 (92.73)
35 + [GCGCAAAG] 497 (85.58)
36 + [GCGCGCCA] 93 (85.74)
36 + [GCGGGAAG] 464 (89.54)
37 + [GCGCGGAC] 104 (89.49)
37 + .GCGGGAAA. 442 (94.73)
38 + [GCGGGGAG] 263 (85.46)
38 + [GCGGCAAA] 470 (87.12)
38 + [GCGCGTAA] 487 (88.60)
39 + .GCGCGGAG. 329 (90.74)
39 + .GCGCGGAG. 365 (90.74)
40 + .GCGCCAAA. 176 (92.39)
40 + [GCGCGGGA] 518 (89.10)
40 + [GCGGGAAG] 520 (89.54)
42 + [GCGCGGGA] 498 (89.10)
42 + [GCGGGAAG] 500 (89.54)
42 + [GCGCGGGA] 519 (89.10)
43 + .GCGCCAAA. 311 (92.39)
43 + [GCCCGGAA] 340 (87.65)
43 + .CCGCGAAA. 506 (90.43)
44 + [CCGCGAAG] 535 (85.24)
45 + [GCGGGAAG] 57 (89.54)
46 + [GCGCCAAC] 355 (85.96)
46 + .CCGCGAAA. 410 (90.43)
47 + .GCGCGAAA. 508 (100.00)
48 + .GCGCGAAA. 399 (100.00)
49 + [GCCCGGAA] 365 (87.65)
49 + [GCGCCAAG] 385 (87.20)
51 + [GCGCGACC] 119 (86.57)
51 + [GCGCGCAC] 311 (86.30)
51 + [GCGCGGGA] 370 (89.10)
51 + [GCGCGCAG] 426 (87.55)
52 + .GCGGGGAA. 440 (90.65)
54 + [GCGCCAAC] 297 (85.96)
54 + [GCGGGAAC] 331 (88.29)
55 + .GCGCGGAA. 366 (95.92)
55 + [GCGCGCAC] 379 (86.30)
55 + .GCGCGGAG. 394 (90.74)
56 + [GCGCCACA] 226 (85.40)
56 + [CCGGGAAA] 276 (85.16)
56 + .GCGGGGAA. 528 (90.65)
57 + [GCGCGCCA] 313 (85.74)
57 + .GCGCGGAG. 347 (90.74)
57 + [GCGCAAAG] 412 (85.58)
57 + .GCGGGGAA. 442 (90.65)
58 + [GCCCGGAA] 83 (87.65)
59 + .CCGCGAAA. 282 (90.43)
59 + [GCGGGAAC] 490 (88.29)
60 + [GCGGGACA] 103 (87.73)
60 + [GCGGGAGA] 254 (87.90)
60 + [GCGCGAGC] 263 (86.74)
60 + [GCGGGGAG] 277 (85.46)
60 + [GCGCGCAC] 405 (86.30)
60 + [GCGGGAGA] 452 (87.90)
61 + [GCGGGAAC] 491 (88.29)
61 + [GCGAGGAA] 523 (86.40)
62 + [GCGGGGAG] 394 (85.46)
62 + .GCGCGGAA. 406 (95.92)
62 + .GCGCGGAG. 523 (90.74)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		7	13	165	5	|		0	3	25	0
2		14	155	16	5	|		0	28	0	0
3		2	18	162	8	|		0	0	28	0
4		11	138	34	7	|		0	22	6	0
5		13	20	151	6	|		0	3	25	0
6		124	18	42	6	|		15	1	12	0
7		141	22	23	4	|		28	0	0	0
8		127	23	32	8	|		19	1	8	0

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TTGGCGCGTA

3 redundant motifs found:
TTGGCGCGAA - TTCGCGCGAA - TTGGCGCG -

Best occurrences (match percentage):
Seq St oligo pos match
2 + .TTGGCGCGAA. 515 (97.35)
7 + [ATGGCGCGCA] 412 (87.46)
13 + .TTGGCGCGAT. 153 (91.39)
13 + .TTGGCGCCAA. 480 (92.00)
13 + [GTGGCGCGCG] 538 (85.52)
19 + .TTGGCGCCAA. 405 (92.00)
23 + [TTGGCGGGAG] 459 (85.14)
23 + .TTGGCGCGAG. 494 (92.18)
24 + [TGGGCGCCTA] 449 (88.33)
27 + .TTGGCGCGCG. 441 (91.83)
29 + .TCGGCGCGCA. 249 (90.68)
30 + [GTGGCGCGCG] 75 (85.52)
33 + [TTGGCGGGTG] 517 (87.79)
35 + .TTGGCGCGAA. 348 (97.35)
35 + .TTGGCGCGAA. 410 (97.35)
38 + .TTGGCGCGTA. 484 (100.00)
46 + .TTGGCGCCAA. 352 (92.00)
47 + [TTCGCGCGAA] 505 (89.92)
48 + .TTGGCGCGAA. 396 (97.35)
49 + [GTGGCGCCAA] 382 (85.70)
54 + .TTGGCGCCAA. 294 (92.00)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		6	10	14	73	|		0	0	0	13
2		9	13	13	68	|		0	1	0	12
3		3	12	84	4	|		0	0	13	0
4		3	12	85	3	|		0	0	13	0
5		5	91	3	4	|		0	13	0	0
6		7	4	87	5	|		0	0	13	0
7		5	82	13	3	|		0	13	0	0
8		6	18	73	6	|		0	4	9	0
9		23	21	13	46	|		10	2	0	1
10		62	12	16	13	|		10	0	2	1

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GTTTGGCGCGAA

2 redundant motifs found:
GATTGGCGCGAA - TTGGCGCGAA -

Best occurrences (match percentage):
Seq St oligo pos match
2 + .GATTGGCGCGAA. 513 (95.94)
13 + .GCTTGGCGCCAA. 478 (90.93)
19 + [ATTTGGCGCCAA] 403 (88.10)
23 + [CTTTGGCGGGAG] 457 (85.25)
23 + [ATTTGGCGCGAG] 492 (89.16)
29 + [GTTCCGCGCGCA] 453 (85.30)
35 + .ATTTGGCGCGAA. 346 (93.31)
35 + .GTTTGGCGCGAA. 408 (100.00)
38 + [ATTTGGCGCGTA] 482 (86.81)
43 + [GTTTCGCGCCAA] 306 (89.50)
46 + .GTTTGGCGCCAA. 350 (94.79)
47 + [TTTTCGCGCGAA] 503 (89.22)
48 + .GGTTGGCGCGAA. 394 (95.94)
54 + .GTTTGGCGCCAA. 292 (94.79)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		9	13	69	13	|		1	0	6	0
2		16	17	16	55	|		1	1	1	4
3		7	17	14	66	|		0	0	0	7
4		9	13	12	70	|		0	0	0	7
5		5	16	80	3	|		0	0	7	0
6		4	14	75	11	|		0	0	7	0
7		7	87	8	2	|		0	7	0	0
8		5	6	84	9	|		0	0	7	0
9		8	76	16	4	|		0	7	0	0
10		4	16	78	6	|		0	3	4	0
11		65	20	10	9	|		7	0	0	0
12		67	12	19	6	|		7	0	0	0

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